Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FYA87_RS13880 | Genome accession | NZ_CP043129 |
| Coordinates | 2748970..2750196 (-) | Length | 408 a.a. |
| NCBI ID | WP_005015354.1 | Uniprot ID | A0A158M167 |
| Organism | Bordetella holmesii strain H719 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2743970..2755196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA87_RS13860 (FYA87_13895) | phnC | 2744665..2745435 (+) | 771 | WP_005015347.1 | phosphonate ABC transporter ATP-binding protein | - |
| FYA87_RS13865 (FYA87_13900) | phnE | 2745423..2746298 (+) | 876 | WP_005019899.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FYA87_RS13870 (FYA87_13905) | phnE | 2746295..2747116 (+) | 822 | WP_005015351.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FYA87_RS13875 (FYA87_13910) | - | 2747313..2748902 (+) | 1590 | WP_005015352.1 | CYTH and CHAD domain-containing protein | - |
| FYA87_RS13880 (FYA87_13915) | pilA | 2748970..2750196 (-) | 1227 | WP_005015354.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FYA87_RS13885 (FYA87_13920) | rsmD | 2750269..2750889 (+) | 621 | WP_026087870.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FYA87_RS13890 (FYA87_13925) | coaD | 2750913..2751425 (+) | 513 | WP_005015356.1 | pantetheine-phosphate adenylyltransferase | - |
| FYA87_RS13895 (FYA87_13930) | - | 2751483..2751737 (+) | 255 | WP_005015357.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| FYA87_RS13900 (FYA87_13935) | - | 2751734..2752945 (+) | 1212 | WP_005015358.1 | benzoate/H(+) symporter BenE family transporter | - |
| FYA87_RS13905 (FYA87_13940) | - | 2752942..2753325 (-) | 384 | WP_005015361.1 | MOSC N-terminal beta barrel domain-containing protein | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 42070.54 Da Isoelectric Point: 7.4722
>NTDB_id=381347 FYA87_RS13880 WP_005015354.1 2748970..2750196(-) (pilA) [Bordetella holmesii strain H719]
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD
Nucleotide
Download Length: 1227 bp
>NTDB_id=381347 FYA87_RS13880 WP_005015354.1 2748970..2750196(-) (pilA) [Bordetella holmesii strain H719]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
49.765 |
100 |
0.52 |