Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPSNT_RS03945 Genome accession   NC_017376
Coordinates   839950..841470 (-) Length   506 a.a.
NCBI ID   WP_000611006.1    Uniprot ID   -
Organism   Helicobacter pylori SNT49     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834950..846470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS08225 (HPSNT_04070) - 836122..836280 (+) 159 WP_000919729.1 hypothetical protein -
  HPSNT_RS03935 (HPSNT_04080) - 836467..837816 (-) 1350 WP_000548905.1 restriction endonuclease subunit S -
  HPSNT_RS03940 (HPSNT_04085) - 837865..839925 (-) 2061 WP_001158832.1 heavy metal translocating P-type ATPase -
  HPSNT_RS03945 (HPSNT_04090) comM 839950..841470 (-) 1521 WP_000611006.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPSNT_RS03950 (HPSNT_04095) def 841476..842000 (-) 525 WP_001185806.1 peptide deformylase -
  HPSNT_RS03955 (HPSNT_04100) clpP 842005..842592 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPSNT_RS03960 (HPSNT_04105) tig 842613..843968 (-) 1356 WP_001047786.1 trigger factor -
  HPSNT_RS03965 (HPSNT_04110) - 844080..844916 (-) 837 WP_001037756.1 outer membrane protein -
  HPSNT_RS03970 (HPSNT_04115) hpaA 844945..845727 (-) 783 WP_000646683.1 flagellar sheath lipoprotein HpaA -
  HPSNT_RS03975 (HPSNT_04120) moaC 845835..846323 (-) 489 WP_001131517.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57192.22 Da        Isoelectric Point: 8.5425

>NTDB_id=38129 HPSNT_RS03945 WP_000611006.1 839950..841470(-) (comM) [Helicobacter pylori SNT49]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSTFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=38129 HPSNT_RS03945 WP_000611006.1 839950..841470(-) (comM) [Helicobacter pylori SNT49]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTACCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATTTTACCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCTAGTATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGGTTTCAAGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAATCCTTGCTTGTGTGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTACAAATGGAAGAG
GGGAATTATAAGGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCACTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.221

100

0.982
  comM Acinetobacter baylyi ADP1

36.008

100

0.364