Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPSNT_RS00200 Genome accession   NC_017376
Coordinates   37238..37981 (+) Length   247 a.a.
NCBI ID   WP_001208407.1    Uniprot ID   -
Organism   Helicobacter pylori SNT49     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32238..42981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS00175 (HPSNT_00160) panD 34396..34749 (+) 354 WP_000142229.1 aspartate 1-decarboxylase -
  HPSNT_RS00180 (HPSNT_00165) - 34752..35045 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HPSNT_RS00185 (HPSNT_00170) - 35045..36049 (+) 1005 WP_000468459.1 PDZ domain-containing protein -
  HPSNT_RS00190 (HPSNT_00175) comB6 36057..37112 (+) 1056 WP_000786650.1 P-type conjugative transfer protein TrbL Machinery gene
  HPSNT_RS00195 (HPSNT_00180) comB7 37128..37241 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPSNT_RS00200 (HPSNT_00185) comB8 37238..37981 (+) 744 WP_001208407.1 type IV secretion system protein Machinery gene
  HPSNT_RS00205 (HPSNT_00190) comB9 37981..38952 (+) 972 WP_014536647.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPSNT_RS00210 (HPSNT_00195) comB10 38945..40075 (+) 1131 WP_001045863.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPSNT_RS00215 (HPSNT_00200) - 40145..41557 (+) 1413 WP_000694844.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPSNT_RS00220 (HPSNT_00205) gmd 41587..42732 (+) 1146 WP_000659832.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28724.94 Da        Isoelectric Point: 8.9661

>NTDB_id=38108 HPSNT_RS00200 WP_001208407.1 37238..37981(+) (comB8) [Helicobacter pylori SNT49]
MREKPFNSEQLIYLEELLSHQEKHLENRLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISGNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=38108 HPSNT_RS00200 WP_001208407.1 37238..37981(+) (comB8) [Helicobacter pylori SNT49]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAGGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGCGTTCTCCCCTTACAAAAAACT
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTGGTAA
TGAAGCTTTGGCCAGATCGCTTATAGGGGCGTATGTGTTAAACCGAGAGAGTATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGTGATTGA

Domains

Predicted by InterProScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment