Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HB370_RS29320 Genome accession   NZ_CP050504
Coordinates   6437319..6438098 (-) Length   259 a.a.
NCBI ID   WP_030785435.1    Uniprot ID   A0ABW0WLK9
Organism   Streptomyces sp. DSM 40868     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6432319..6443098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS29310 (HB370_29310) - 6434299..6435069 (+) 771 WP_030785441.1 GNAT family N-acetyltransferase -
  HB370_RS29315 (HB370_29315) - 6435201..6437177 (+) 1977 WP_030785438.1 ATP-dependent DNA helicase -
  HB370_RS29320 (HB370_29320) dinR/lexA 6437319..6438098 (-) 780 WP_030785435.1 transcriptional repressor LexA Regulator
  HB370_RS29325 (HB370_29325) nrdR 6438661..6439209 (+) 549 WP_030785431.1 transcriptional regulator NrdR -
  HB370_RS29330 (HB370_29330) - 6439374..6442265 (+) 2892 WP_030785429.1 vitamin B12-dependent ribonucleotide reductase -
  HB370_RS29335 (HB370_29335) - 6442337..6442870 (-) 534 WP_030785427.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28040.76 Da        Isoelectric Point: 6.9854

>NTDB_id=381046 HB370_RS29320 WP_030785435.1 6437319..6438098(-) (dinR/lexA) [Streptomyces sp. DSM 40868]
MTTTADSATITAQDRSQGRVEPVHAMNEATNPEGNKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQTVTVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=381046 HB370_RS29320 WP_030785435.1 6437319..6438098(-) (dinR/lexA) [Streptomyces sp. DSM 40868]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGAGTCGAGCCGGTACACGCGATGAA
CGAAGCCACGAATCCCGAGGGAAACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGACTCA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGAGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTCGGCCTTTCCAGCACCTCCTCCGTCGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCCCACCGCCCGCGCGCCTACGAGGTCCGCGGATCGGACCAGACGGTCACCGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTTCCGCTCGTCGGCCGCATCGCCGCCGGCGGCCCCATCCTCGCGGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAACTCTTCGTCCTCAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTACGCCGTCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCCCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTCGCCGTACTGCGGCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378