Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HB370_RS13960 Genome accession   NZ_CP050504
Coordinates   3097523..3099451 (+) Length   642 a.a.
NCBI ID   WP_030777061.1    Uniprot ID   A0ABW6YNZ4
Organism   Streptomyces sp. DSM 40868     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3092523..3104451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS13945 (HB370_13945) - 3093814..3094107 (+) 294 WP_030777052.1 hypothetical protein -
  HB370_RS13950 (HB370_13950) - 3094199..3095638 (+) 1440 WP_030777056.1 FGGY family carbohydrate kinase -
  HB370_RS13955 (HB370_13955) rcrP 3095790..3097523 (+) 1734 WP_030777058.1 ABC transporter ATP-binding protein Regulator
  HB370_RS13960 (HB370_13960) rcrQ 3097523..3099451 (+) 1929 WP_030777061.1 ABC transporter ATP-binding protein Regulator
  HB370_RS13965 (HB370_13965) - 3099484..3100629 (-) 1146 WP_030777063.1 RNA polymerase sigma factor -
  HB370_RS13970 (HB370_13970) dnaG 3100828..3102735 (-) 1908 WP_030777066.1 DNA primase -
  HB370_RS13975 (HB370_13975) - 3102783..3104048 (-) 1266 WP_030777068.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69828.33 Da        Isoelectric Point: 5.7202

>NTDB_id=381008 HB370_RS13960 WP_030777061.1 3097523..3099451(+) (rcrQ) [Streptomyces sp. DSM 40868]
MAGPMGRMMAGGGPDQRSMDFKGSGRRLVARFRPERLTIYALLLCVVVSVGLSVVGPKILGRATDLVFAGLIGRQMPHGA
TKEQVLDSMRERGEGRVADMLKSTDFTPGEGIDFTAVGHVLLLALGTFLVAGLLMAVATRLVNRAVNRTMYRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIVGVLVMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQEESAEQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPAELRGRVCLE
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSAGRITLDGVDIRSMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGAAREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLASGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAGGAYARLYEAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=381008 HB370_RS13960 WP_030777061.1 3097523..3099451(+) (rcrQ) [Streptomyces sp. DSM 40868]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGTGGCCCCGACCAGCGCTCGATGGACTTCAAGGGGTCGGGCAGACG
GCTCGTCGCCCGGTTCCGGCCGGAGCGGCTGACGATCTACGCGCTGCTGCTGTGCGTGGTCGTCAGCGTGGGCCTGAGCG
TGGTCGGCCCGAAGATCCTCGGCCGCGCCACCGACCTGGTCTTCGCCGGCCTCATCGGCCGGCAGATGCCGCACGGCGCC
ACCAAGGAGCAGGTGCTCGACTCCATGCGCGAGCGCGGCGAGGGCCGGGTCGCGGACATGCTGAAGAGCACCGACTTCAC
CCCCGGCGAGGGCATCGACTTCACCGCCGTGGGGCATGTGCTGCTGCTCGCCCTCGGCACCTTCCTCGTCGCGGGCCTGC
TGATGGCGGTCGCGACCCGGCTGGTCAACCGGGCCGTGAACCGCACGATGTACCGGATGCGGGAGGACGTGCAGGCCAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCGTCGGCGTGCTGGTGATGATGT
TCTGGGTGTCCTGGATCCTGGCGCTGGTGGCCCTCGTCACCGTCCCGCTGTCGTTCGTGGTCGCCACCCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGTCCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTCGCCTCCGGCGCCCTGTCGATCGGTGACGTGCAGGCGTTCATACAGTACTCACGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCGTGGCCTCCGCCGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTGCCGGGCGAGCGGCCGGCCGAGCTGCGCGGGCGGGTGTGCCTGGAG
CACGTGTCGTTCCGGTACGACCCCGAGAAGCCACTGATCGAGGACCTGTCGCTGACGGTGGAGCCGGGACACACGGTGGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTCATGCGGTTCTACGACGTCTCGGCCGGCCGGA
TCACCCTGGACGGGGTGGACATCCGGAGCATGACCCGGGACGAACTGCGTTCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCGCGCGCGAGGTGACGCGCGGGGAGATCGAGGAGGC
GGCTCGGGCGGCCCACGCGGACCGGTTCATCCGTACCCTCCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGG
GCGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACCAGCTCCGTGGACACGCGCACGGAGGTGCTGATCCAGAAGGCGATGGCCAAACTCGCGTCGGGCCGTACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCGCGCACGCCGAGCTGTTGGCGGCCGGCGGGGCGTACGCCCGGCTGTACGAGGCGCAGTTCGCGCAGGCCGTGGCCGAA
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.704

92.991

0.379

Multiple sequence alignment