Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HB370_RS13955 Genome accession   NZ_CP050504
Coordinates   3095790..3097523 (+) Length   577 a.a.
NCBI ID   WP_030777058.1    Uniprot ID   A0ABW6YQ21
Organism   Streptomyces sp. DSM 40868     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090790..3102523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS13925 (HB370_13925) - 3091242..3092921 (-) 1680 WP_244405519.1 SWIM zinc finger family protein -
  HB370_RS13945 (HB370_13945) - 3093814..3094107 (+) 294 WP_030777052.1 hypothetical protein -
  HB370_RS13950 (HB370_13950) - 3094199..3095638 (+) 1440 WP_030777056.1 FGGY family carbohydrate kinase -
  HB370_RS13955 (HB370_13955) rcrP 3095790..3097523 (+) 1734 WP_030777058.1 ABC transporter ATP-binding protein Regulator
  HB370_RS13960 (HB370_13960) rcrQ 3097523..3099451 (+) 1929 WP_030777061.1 ABC transporter ATP-binding protein Regulator
  HB370_RS13965 (HB370_13965) - 3099484..3100629 (-) 1146 WP_030777063.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62470.64 Da        Isoelectric Point: 6.2730

>NTDB_id=381007 HB370_RS13955 WP_030777058.1 3095790..3097523(+) (rcrP) [Streptomyces sp. DSM 40868]
MLIRLLRTYLRPYKKPIALLVVFQFLQTCATLYLPTLNADIIDNGVVKGDTDYILSFGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSTV
LIAVVPVLGVSVTLIVRRLRPLFRSMQDRLDTVNRVLREQISGNRVIRAFVRDSYEQERFGKANTELTEMQLATGRLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMAIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PAAPVTGLRSHGHLELRGAGFRYPGAEEPVLKSIDLVARPGRTTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVGGVDVR
EIDPVLLAKTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVTKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGSGRHAELMASN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=381007 HB370_RS13955 WP_030777058.1 3095790..3097523(+) (rcrP) [Streptomyces sp. DSM 40868]
GTGCTCATACGACTTCTACGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTCCTGGTGGTGTTCCAGTTCCTCCA
GACCTGCGCGACCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGACTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGGGCCGTGTACTACGGCGCC
CGGACCGCCTCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGGTGGG
TCACTTCGGGGCGCCCTCCCTCATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCACCGTG
CTGATCGCGGTCGTGCCGGTGCTCGGGGTCAGTGTGACCCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCGATGCA
GGACCGGCTGGACACGGTCAACCGGGTGCTGCGCGAGCAGATCAGCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACT
CCTACGAGCAGGAGCGGTTCGGCAAGGCCAACACGGAGCTGACCGAGATGCAGCTGGCCACCGGCCGGCTGCTGGCCCTG
ATGTTCCCGATCGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGCCATCGGTGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTCGTGCCG
CCGGCGGCCCCCGTCACCGGGCTGCGCTCCCACGGGCACCTGGAGCTCCGGGGCGCGGGCTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTGAAGTCCATCGACCTCGTGGCCCGGCCCGGCCGGACCACGGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTGGTGGGCGGCGTGGACGTGCGC
GAGATCGACCCGGTGCTGCTCGCGAAGACCGTAGGGCTCGTCCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTCGCCAG
CAACCTTCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGACCAAGCTGGAGGGCGGCCTGGACGCGCCGATCGCGCAAGGAGGCACCAATGTCTCCGGCGGTCAGCGGCAACGGCTC
GCCATCGCCCGCACACTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCCGCCCTGCGCGCCGCGCTGGCCCGGGAGACCGCCGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCGGACCGGATCATCGTGCTGGACGAGGGCCGGGTGGTCGGCTCCGGCCGGCACGCCGAGCTGATGGCATCCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.929

97.054

0.378