Detailed information NTG0380921

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FYB25_RS13820
• Genome accession: NZ_CP043096
• Coordinates: 2915678..2916877 (-)
• Length: 399 a.a.
• NCBI ID: WP_041937118.1
• Uniprot ID: -
• Organism: Bordetella parapertussis strain J220
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2910678..2921877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYB25_RS13800 (FYB25_13725)	phnC	2911319..2912089 (+)	771	WP_010927715.1	phosphonate ABC transporter ATP-binding protein	-
FYB25_RS13805 (FYB25_13730)	phnE	2912107..2912976 (+)	870	WP_169507383.1	phosphonate ABC transporter, permease protein PhnE	-
FYB25_RS13810 (FYB25_13735)	phnE	2912973..2913794 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
FYB25_RS13815 (FYB25_13740)	-	2914033..2915631 (+)	1599	WP_010927713.1	CYTH and CHAD domain-containing protein	-
FYB25_RS13820 (FYB25_13745)	pilA	2915678..2916877 (-)	1200	WP_041937118.1	signal recognition particle-docking protein FtsY	Machinery gene
FYB25_RS13825 (FYB25_13750)	rsmD	2916953..2917573 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FYB25_RS13830 (FYB25_13755)	coaD	2917594..2918103 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
FYB25_RS13835 (FYB25_13760)	-	2918158..2918409 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FYB25_RS13840 (FYB25_13765)	-	2918406..2919623 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
FYB25_RS13845 (FYB25_13770)	-	2919631..2920017 (-)	387	WP_010927711.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41695.66 Da
• Isoelectric Point: 5.2904

>NTDB_id=380921 FYB25_RS13820 WP_041937118.1 2915678..2916877(-) (pilA) [Bordetella parapertussis strain J220]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=380921 FYB25_RS13820 WP_041937118.1 2915678..2916877(-) (pilA) [Bordetella parapertussis strain J220]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (195-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516