Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CLOCEL_RS22255 Genome accession   NC_014393
Coordinates   1879908..1880075 (-) Length   55 a.a.
NCBI ID   WP_081446474.1    Uniprot ID   -
Organism   Clostridium cellulovorans 743B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1874908..1885075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOCEL_RS07675 (Clocel_1524) - 1876810..1877184 (+) 375 WP_010077522.1 four-helix bundle copper-binding protein -
  CLOCEL_RS07680 (Clocel_1525) - 1877535..1878881 (-) 1347 Protein_1520 sulfite exporter TauE/SafE family protein -
  CLOCEL_RS07685 (Clocel_1526) - 1879142..1879915 (+) 774 WP_010077520.1 sirohydrochlorin cobaltochelatase -
  CLOCEL_RS22255 pilJ 1879908..1880075 (-) 168 WP_081446474.1 methyl-accepting chemotaxis protein Machinery gene
  CLOCEL_RS07690 - 1880367..1880687 (-) 321 WP_081446449.1 MCP four helix bundle domain-containing protein -
  CLOCEL_RS07695 (Clocel_1528) - 1880903..1883473 (-) 2571 WP_010077518.1 SpoIID/LytB domain-containing protein -
  CLOCEL_RS07700 (Clocel_1529) modA 1884155..1884976 (+) 822 WP_010077517.1 molybdate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 5910.69 Da        Isoelectric Point: 4.5300

>NTDB_id=38092 CLOCEL_RS22255 WP_081446474.1 1879908..1880075(-) (pilJ) [Clostridium cellulovorans 743B]
MTQIITAISEQTNLLTLNAAIEAARAGESGKGFNVVAEEIRKLSYETNSATKEII

Nucleotide


Download         Length: 168 bp        

>NTDB_id=38092 CLOCEL_RS22255 WP_081446474.1 1879908..1880075(-) (pilJ) [Clostridium cellulovorans 743B]
ATTACTCAAATAATAACTGCCATCTCAGAACAAACAAATCTTTTAACTCTTAATGCTGCCATTGAAGCAGCTCGTGCAGG
GGAATCAGGCAAAGGCTTTAACGTCGTAGCAGAGGAAATCAGAAAGTTATCTTATGAGACCAATAGTGCTACTAAAGAGA
TTATTTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(2-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

52.941

92.727

0.491

Multiple sequence alignment