Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HMPREF0462_RS02995 Genome accession   NC_017375
Coordinates   593167..594687 (+) Length   506 a.a.
NCBI ID   WP_000611086.1    Uniprot ID   -
Organism   Helicobacter pylori 83     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588167..599687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS02965 (HMPREF0462_0611) moaC 588315..588791 (+) 477 WP_001131561.1 cyclic pyranopterin monophosphate synthase MoaC -
  HMPREF0462_RS02970 (HMPREF0462_0612) hpaA 588910..589692 (+) 783 WP_000646575.1 flagellar sheath lipoprotein HpaA -
  HMPREF0462_RS02975 (HMPREF0462_0613) - 589721..590557 (+) 837 WP_001037760.1 outer membrane protein -
  HMPREF0462_RS02980 (HMPREF0462_0614) tig 590669..592024 (+) 1356 WP_001047762.1 trigger factor -
  HMPREF0462_RS02985 (HMPREF0462_0615) clpP 592045..592632 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HMPREF0462_RS02990 (HMPREF0462_0616) def 592637..593161 (+) 525 WP_001185801.1 peptide deformylase -
  HMPREF0462_RS02995 (HMPREF0462_0617) comM 593167..594687 (+) 1521 WP_000611086.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HMPREF0462_RS03000 (HMPREF0462_0618) - 594712..596772 (+) 2061 WP_001158876.1 heavy metal translocating P-type ATPase -
  HMPREF0462_RS03005 (HMPREF0462_0619) - 596814..597413 (+) 600 Protein_591 restriction endonuclease subunit S -
  HMPREF0462_RS03010 (HMPREF0462_0620) hofF 597709..599208 (-) 1500 WP_001108260.1 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57267.24 Da        Isoelectric Point: 8.2333

>NTDB_id=38085 HMPREF0462_RS02995 WP_000611086.1 593167..594687(+) (comM) [Helicobacter pylori 83]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=38085 HMPREF0462_RS02995 WP_000611086.1 593167..594687(+) (comM) [Helicobacter pylori 83]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACTATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTCTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAAGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCACAGCAAGATTGAATACGAAAC
TTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACAATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment