Detailed information NTG0380737

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FYB40_RS13530
• Genome accession: NZ_CP043083
• Coordinates: 2873013..2874212 (+)
• Length: 399 a.a.
• NCBI ID: WP_041937118.1
• Uniprot ID: -
• Organism: Bordetella parapertussis strain J293
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2868013..2879212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYB40_RS13505 (FYB40_13495)	-	2869873..2870259 (+)	387	WP_010927711.1	MOSC N-terminal beta barrel domain-containing protein	-
FYB40_RS13510 (FYB40_13500)	-	2870267..2871484 (-)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
FYB40_RS13515 (FYB40_13505)	-	2871481..2871732 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FYB40_RS13520 (FYB40_13510)	coaD	2871787..2872296 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
FYB40_RS13525 (FYB40_13515)	rsmD	2872317..2872937 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FYB40_RS13530 (FYB40_13520)	pilA	2873013..2874212 (+)	1200	WP_041937118.1	signal recognition particle-docking protein FtsY	Machinery gene
FYB40_RS13535 (FYB40_13525)	-	2874259..2875857 (-)	1599	WP_010927713.1	CYTH and CHAD domain-containing protein	-
FYB40_RS13540 (FYB40_13530)	phnE	2876095..2876916 (-)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
FYB40_RS13545 (FYB40_13535)	phnE	2876913..2877782 (-)	870	WP_169507383.1	phosphonate ABC transporter, permease protein PhnE	-
FYB40_RS13550 (FYB40_13540)	phnC	2877800..2878570 (-)	771	WP_010927715.1	phosphonate ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41695.66 Da
• Isoelectric Point: 5.2904

>NTDB_id=380737 FYB40_RS13530 WP_041937118.1 2873013..2874212(+) (pilA) [Bordetella parapertussis strain J293]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=380737 FYB40_RS13530 WP_041937118.1 2873013..2874212(+) (pilA) [Bordetella parapertussis strain J293]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (195-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516