Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FXO12_RS23115 Genome accession   NZ_CP043060
Coordinates   5048276..5049643 (+) Length   455 a.a.
NCBI ID   WP_003194313.1    Uniprot ID   A0AAJ3JSD5
Organism   Pseudomonas sp. J380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5043276..5054643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO12_RS23090 (FXO12_23090) - 5043424..5044134 (-) 711 WP_034126948.1 LuxR family transcriptional regulator -
  FXO12_RS23095 (FXO12_23095) - 5044580..5045356 (+) 777 WP_019818025.1 ferredoxin--NADP reductase -
  FXO12_RS23100 (FXO12_23100) mscL 5045398..5045814 (-) 417 WP_014720019.1 large-conductance mechanosensitive channel protein MscL -
  FXO12_RS23105 (FXO12_23105) katB 5046102..5047643 (+) 1542 WP_057975521.1 catalase KatB -
  FXO12_RS23110 (FXO12_23110) - 5047701..5048240 (+) 540 WP_054896156.1 ankyrin repeat domain-containing protein -
  FXO12_RS23115 (FXO12_23115) radA 5048276..5049643 (+) 1368 WP_003194313.1 DNA repair protein RadA Machinery gene
  FXO12_RS23120 (FXO12_23120) - 5049773..5050141 (-) 369 WP_054896155.1 PilZ domain-containing protein -
  FXO12_RS23125 (FXO12_23125) - 5050316..5052382 (+) 2067 WP_054896154.1 carbon starvation CstA family protein -
  FXO12_RS23130 (FXO12_23130) - 5052397..5052594 (+) 198 WP_054918032.1 YbdD/YjiX family protein -
  FXO12_RS23135 (FXO12_23135) yjiA 5052779..5053735 (+) 957 WP_014720013.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48757.26 Da        Isoelectric Point: 6.8987

>NTDB_id=380439 FXO12_RS23115 WP_003194313.1 5048276..5049643(+) (radA) [Pseudomonas sp. J380]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=380439 FXO12_RS23115 WP_003194313.1 5048276..5049643(+) (radA) [Pseudomonas sp. J380]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGTGCCGCGGCCCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACCGCCTCCGGCGAATTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCCACTAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCTGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCTAAAGTCATGGTCATTGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
CGGCGGCGTGTCTCAGGTGCGCGAAAGCGCGGCGCTGTTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAAGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACATATGGTCGACACCGTGTTGTATTTCGAA
GGGGAATCCGACGGTCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCCGTCAACGAACTGGGTGTGTTCGC
TATGACCGATCGGGGGCTGAAAGAAGTCTCGAACCCCTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCA
AACCCACGGCGGGTCACACTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGGCATGGTGGCAT
TCCGACTCACGATCAGGATGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACTGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAATCGGCCGTTGCCCCATGACTTGTTGGTGTTTGGCGAGGTGGGTCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGGGCGATTGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGCCGGGGTTGCAGATTATTGCTGTGACGCGGCTGGAGCAGGCGTTGGATGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment