Detailed information NTG0380308

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FXN63_RS09615
• Genome accession: NZ_CP043046
• Coordinates: 2259809..2261173 (+)
• Length: 454 a.a.
• NCBI ID: WP_148814447.1
• Uniprot ID: A0A5C0AWN2
• Organism: Pigmentiphaga aceris strain Mada1488
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2254809..2266173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXN63_RS09605 (FXN63_09605)	-	2255416..2258595 (+)	3180	WP_148814445.1	efflux RND transporter permease subunit	-
FXN63_RS09610 (FXN63_09610)	alr	2258696..2259805 (+)	1110	WP_148814446.1	alanine racemase	-
FXN63_RS09615 (FXN63_09615)	radA	2259809..2261173 (+)	1365	WP_148814447.1	DNA repair protein RadA	Machinery gene
FXN63_RS09620 (FXN63_09620)	-	2261319..2263214 (-)	1896	WP_148814448.1	tetratricopeptide repeat protein	-
FXN63_RS09625 (FXN63_09625)	-	2263211..2264467 (-)	1257	WP_148814449.1	glycosyltransferase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 47756.81 Da
• Isoelectric Point: 6.8980

>NTDB_id=380308 FXN63_RS09615 WP_148814447.1 2259809..2261173(+) (radA) [Pigmentiphaga aceris strain Mada1488]
MAKAKTVYTCTECGGTNPKWEGKCPHCGSWNTLVEGIAEASGAGAAHRYAPLAASAPVRKLSEITAREEPRFSTGIDEFD
RVLGGGMVAGAVILIGGDPGIGKSTLLLQAVAALSASRKVLYVTGEESADQVALRATRLGLDSGDVALLPEIRLEAIQAA
LTAEAPSVAVIDSIQTIYSDQLTSAPGSVSQVRECAAQLTRIAKQTGTSMVLIGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSYRLVRAIKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEEQVPGSCVMVTQEGTRPLLVEVQALVDTANMPN
PRRLSVGLEGNRLAMLLAVLHRHAGVSAADQDVFVNAVGGVRISEPASDLAVLAAIVSSLRNKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRTPIEGLEIWAVDRLDAALDRLRG

Nucleotide

• Length: 1365 bp

>NTDB_id=380308 FXN63_RS09615 WP_148814447.1 2259809..2261173(+) (radA) [Pigmentiphaga aceris strain Mada1488]
ATGGCCAAGGCAAAAACGGTATACACCTGCACCGAGTGCGGTGGCACCAACCCGAAATGGGAAGGCAAGTGCCCGCACTG
CGGTTCCTGGAACACCCTGGTCGAAGGGATTGCAGAAGCATCGGGCGCGGGTGCCGCGCATCGTTACGCACCGCTGGCAG
CCAGTGCCCCGGTCCGCAAGCTGTCCGAAATCACGGCCCGCGAAGAGCCGCGCTTCTCCACCGGCATCGATGAGTTCGAT
CGGGTGCTGGGCGGCGGCATGGTGGCCGGTGCAGTGATCCTGATCGGCGGCGATCCGGGCATTGGCAAGTCGACACTGCT
GCTGCAAGCCGTGGCTGCCTTGTCGGCCAGCCGTAAGGTTTTGTATGTCACGGGTGAAGAGTCTGCAGACCAGGTGGCTT
TGCGCGCCACGCGCCTTGGTCTGGACAGCGGCGATGTGGCCTTGCTGCCCGAAATTCGCCTGGAAGCCATCCAGGCGGCG
CTGACAGCAGAAGCGCCCTCAGTGGCCGTGATCGACTCGATCCAGACCATTTATTCCGACCAACTGACTTCTGCCCCCGG
TTCCGTCTCGCAAGTACGTGAATGCGCGGCGCAACTGACCCGCATCGCCAAGCAAACCGGCACATCCATGGTGCTGATCG
GCCACGTGACGAAGGAAGGCGCGCTGGCTGGTCCCCGTGTGCTGGAACACATCGTTGATACCGTGCTGTATTTCGAAGGC
GATACGCATTCGTCCTACCGCTTGGTGCGCGCCATCAAGAACCGTTTTGGTGCCGTCAACGAGTTGGGCGTGTTCGCCAT
GACCGACCGGGGTTTGCGCGGCGTGGCGAACCCGTCGGCACTGTTCCTGTCGCAGCACGAAGAGCAGGTGCCGGGTTCCT
GCGTGATGGTCACCCAAGAGGGCACGCGTCCGCTGCTGGTTGAAGTGCAGGCCTTGGTGGATACGGCCAACATGCCGAAT
CCGCGTCGTTTGTCGGTTGGCCTGGAAGGCAATCGACTGGCCATGTTGCTGGCGGTGCTGCATCGTCATGCGGGCGTGTC
GGCTGCCGACCAAGACGTGTTCGTGAACGCCGTGGGTGGCGTTCGCATCAGCGAGCCGGCATCCGACCTGGCGGTGCTGG
CGGCGATTGTTTCGTCCCTGCGCAACAAGCCTTTGCCGCGTGGCTTGATCGCGTTTGGTGAAGTCGGCCTGGCGGGAGAA
ATCCGCCCGGCACCGCGCGGCCAGGAACGTCTGCGTGAGGCGGCCAAACTGGGCTTCAGCATTGCGCTCATCCCCAAGGC
AAACGCGCCGCGCACGCCGATCGAAGGGCTGGAAATATGGGCGGTGGATCGCCTGGATGCCGCGCTGGACAGACTGCGCG
GCTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (81-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A5C0AWN2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.67	100	0.498
radA	Streptococcus mitis SK321	46.137	99.78	0.46
radA	Streptococcus mitis NCTC 12261	45.916	99.78	0.458
radA	Streptococcus pneumoniae TIGR4	48.122	93.833	0.452
radA	Streptococcus pneumoniae D39	48.122	93.833	0.452
radA	Streptococcus pneumoniae Rx1	48.122	93.833	0.452
radA	Streptococcus pneumoniae R6	48.122	93.833	0.452