Detailed information NTG0380234

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FXF36_RS00655
• Genome accession: NZ_CP043028
• Coordinates: 137974..139359 (-)
• Length: 461 a.a.
• NCBI ID: WP_151621988.1
• Uniprot ID: -
• Organism: Pseudobutyrivibrio xylanivorans strain MA3014
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 132974..144359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXF36_RS00630 (FXF36_00630)	-	133253..133501 (+)	249	WP_191992581.1	AAA family ATPase	-
FXF36_RS00655 (FXF36_00650)	radA	137974..139359 (-)	1386	WP_151621988.1	DNA repair protein RadA	Machinery gene
FXF36_RS00660 (FXF36_00655)	-	139432..139845 (-)	414	WP_151621989.1	endosialidase	-
FXF36_RS00665 (FXF36_00660)	-	139940..142378 (-)	2439	WP_151621990.1	ATP-dependent Clp protease ATP-binding subunit	-
FXF36_RS00670 (FXF36_00665)	-	142397..143842 (-)	1446	WP_151621991.1	hypothetical protein	-
FXF36_RS00675 (FXF36_00670)	-	143956..144147 (-)	192	WP_151621992.1	hypothetical protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 49741.34 Da
• Isoelectric Point: 6.6912

>NTDB_id=380234 FXF36_RS00655 WP_151621988.1 137974..139359(-) (radA) [Pseudobutyrivibrio xylanivorans strain MA3014]
MAKKNISVFFCQNCGNETSKWSGQCPACGAWNTLVEEVVDKATVKTRAKVSDVKPTKLIDVTTSNEMRISTNIEEFDRVL
GGGIVPGSMVLVGGDPGIGKSTLLLQTCQKLCNAGTNVMYVSGEESLQQIKIRADRIGTFNDKLDLFCETNLDTIKAVVE
REKPTVLIIDSIQTMYNETVGSAPGSVSQVRESTGVLMEIAKGIGIAVFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRGVKNRFGSTNEIGVFEMRDTGLEQVKNPSSVMLDGRPDNATGSIVTCSMEGTRPILVEIQSLVSKTAFEIPR
RMATGCDYNRVNLLVAVLERMRDVKANKSCGIFLGRSDIYVNIAGGIRINEPAVDLAIALAIYTSEKDIAVDPGVIVFGE
IGLTGEVRSVSMAEQRVTEAKKLGFNKAIIPASNLPSVKSIKGIDIVGVSNIKEAVDAISR

Nucleotide

• Length: 1386 bp

>NTDB_id=380234 FXF36_RS00655 WP_151621988.1 137974..139359(-) (radA) [Pseudobutyrivibrio xylanivorans strain MA3014]
ATGGCTAAAAAAAATATTTCTGTTTTTTTCTGTCAGAATTGCGGTAACGAAACTTCAAAATGGTCAGGCCAGTGTCCTGC
CTGTGGCGCATGGAATACTCTTGTAGAAGAGGTTGTTGATAAAGCAACAGTTAAAACAAGAGCTAAGGTCTCTGACGTGA
AACCGACGAAGCTTATAGATGTCACTACGTCAAATGAGATGAGGATTTCCACAAATATTGAGGAATTTGACAGAGTTTTA
GGCGGTGGAATCGTTCCAGGTTCAATGGTTCTTGTGGGTGGAGATCCAGGTATTGGAAAATCTACATTACTATTGCAGAC
TTGTCAGAAACTTTGCAATGCAGGTACCAATGTCATGTATGTTTCAGGCGAGGAATCTCTCCAACAAATTAAAATTCGTG
CAGACAGAATAGGGACCTTTAACGATAAATTGGATTTATTCTGTGAAACAAATCTTGATACAATAAAGGCTGTAGTTGAA
CGAGAAAAGCCAACTGTTCTCATAATAGATTCTATTCAAACAATGTATAATGAGACTGTAGGCTCTGCGCCAGGCTCAGT
TTCTCAGGTGAGGGAATCAACGGGCGTATTGATGGAAATCGCCAAAGGAATTGGGATTGCGGTATTTATTGTTGGACATG
TAACAAAAGAGGGAACAGTGGCTGGTCCTAGAGTACTTGAACACATGGTTGATACGGTACTTTATTTTGAAGGTGACAGA
CATGCTTCCTATAGGATCCTTAGAGGTGTAAAGAATAGATTTGGCTCCACAAACGAAATTGGTGTTTTTGAAATGCGTGA
TACTGGACTTGAACAGGTTAAGAATCCTTCTTCTGTAATGTTGGACGGTCGTCCTGACAATGCAACCGGGTCTATTGTAA
CCTGCTCAATGGAGGGAACTCGCCCAATTCTTGTGGAGATTCAGTCTCTGGTTAGCAAGACAGCGTTTGAAATTCCACGT
AGAATGGCCACAGGCTGTGATTACAATCGCGTAAACCTTTTAGTTGCAGTTCTTGAAAGGATGAGAGATGTAAAAGCAAA
TAAATCTTGTGGTATCTTCCTCGGACGTTCTGATATATATGTAAATATCGCTGGCGGAATCCGCATTAATGAGCCCGCTG
TTGATTTGGCAATAGCATTGGCAATCTATACTAGCGAAAAGGATATAGCTGTTGATCCTGGCGTGATTGTGTTTGGCGAG
ATAGGACTTACAGGTGAAGTGCGTTCTGTTTCTATGGCAGAGCAGCGTGTTACAGAAGCTAAAAAGCTTGGTTTCAATAA
AGCAATAATTCCAGCATCTAATTTACCTTCAGTCAAATCTATAAAAGGAATAGATATTGTTGGTGTTTCTAATATCAAAG
AAGCAGTTGATGCCATATCTCGTTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-434)

• AAA domain (AAA_25) (68-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	55.459	99.349	0.551
radA	Streptococcus pneumoniae Rx1	53.579	100	0.536
radA	Streptococcus pneumoniae D39	53.579	100	0.536
radA	Streptococcus pneumoniae R6	53.579	100	0.536
radA	Streptococcus pneumoniae TIGR4	53.579	100	0.536
radA	Streptococcus mitis NCTC 12261	53.362	100	0.534
radA	Streptococcus mitis SK321	53.362	100	0.534