Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FXN66_RS09655 Genome accession   NZ_CP043027
Coordinates   2028847..2029452 (+) Length   201 a.a.
NCBI ID   WP_151116268.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica strain AD19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2023847..2034452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN66_RS09635 (FXN66_09635) - 2024241..2026001 (-) 1761 WP_000156448.1 AAA family ATPase -
  FXN66_RS09640 (FXN66_09640) matP 2026187..2026639 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FXN66_RS09645 (FXN66_09645) ompA 2026711..2027763 (-) 1053 WP_001670727.1 porin OmpA -
  FXN66_RS09650 (FXN66_09650) sulA 2028121..2028630 (-) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  FXN66_RS09655 (FXN66_09655) sxy/tfoX 2028847..2029452 (+) 606 WP_151116268.1 TfoX/Sxy family DNA transformation protein Regulator
  FXN66_RS09660 (FXN66_09660) yccS 2029439..2031592 (-) 2154 WP_079959530.1 YccS family putative transporter -
  FXN66_RS09665 (FXN66_09665) - 2031611..2032057 (-) 447 WP_001261222.1 YccF domain-containing protein -
  FXN66_RS09670 (FXN66_09670) helD 2032181..2034235 (+) 2055 WP_151116270.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23218.95 Da        Isoelectric Point: 8.4490

>NTDB_id=380216 FXN66_RS09655 WP_151116268.1 2028847..2029452(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain AD19]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVDNGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=380216 FXN66_RS09655 WP_151116268.1 2028847..2029452(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain AD19]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAATATCGATCCTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGATAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTCCGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment