Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HB367_RS16700 Genome accession   NZ_CP050415
Coordinates   3405038..3405400 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain PM193665     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400038..3410400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS16685 (HB367_16685) - 3402532..3403650 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  HB367_RS16690 (HB367_16690) - 3403710..3404348 (-) 639 WP_002027721.1 hypothetical protein -
  HB367_RS16695 (HB367_16695) pilG 3404631..3405014 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  HB367_RS16700 (HB367_16700) pilH 3405038..3405400 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  HB367_RS16705 (HB367_16705) - 3405461..3405997 (+) 537 WP_034129410.1 chemotaxis protein CheW -
  HB367_RS16710 (HB367_16710) - 3406044..3408122 (+) 2079 WP_034129409.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=380190 HB367_RS16700 WP_000101096.1 3405038..3405400(+) (pilH) [Acinetobacter baumannii strain PM193665]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=380190 HB367_RS16700 WP_000101096.1 3405038..3405400(+) (pilH) [Acinetobacter baumannii strain PM193665]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392