Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FW415_RS04960 Genome accession   NZ_CP043006
Coordinates   1176482..1177855 (+) Length   457 a.a.
NCBI ID   WP_148383184.1    Uniprot ID   -
Organism   Chitinophaga sp. XS-30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171482..1182855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FW415_RS04935 (FW415_04935) tsf 1172074..1172898 (-) 825 WP_148383179.1 translation elongation factor Ts -
  FW415_RS04940 (FW415_04940) rpsB 1173024..1174007 (-) 984 WP_148383180.1 30S ribosomal protein S2 -
  FW415_RS04945 (FW415_04945) rpsI 1174053..1174442 (-) 390 WP_148383181.1 30S ribosomal protein S9 -
  FW415_RS04950 (FW415_04950) rplM 1174456..1174899 (-) 444 WP_148383182.1 50S ribosomal protein L13 -
  FW415_RS04955 (FW415_04955) - 1175224..1175913 (-) 690 WP_148383183.1 zinc metallopeptidase -
  FW415_RS04960 (FW415_04960) radA 1176482..1177855 (+) 1374 WP_148383184.1 DNA repair protein RadA Machinery gene
  FW415_RS04965 (FW415_04965) - 1177867..1178547 (+) 681 WP_148383185.1 ComF family protein -
  FW415_RS24890 - 1178636..1178812 (-) 177 WP_168208671.1 hypothetical protein -
  FW415_RS04970 (FW415_04970) - 1179241..1180257 (+) 1017 WP_148383186.1 homocysteine S-methyltransferase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50935.72 Da        Isoelectric Point: 6.5105

>NTDB_id=380175 FW415_RS04960 WP_148383184.1 1176482..1177855(+) (radA) [Chitinophaga sp. XS-30]
MAKIKTAFFCQNCGYESAKWTGKCPSCNQWNTFVEEKVQKDMPLRQQEWKEKPESPRAPKVVNLEAVEGIAEKRWLTPDA
ELNRVLGGGIVAGSLVLVGGEPGIGKSTLFLQNALLLNGIRTLYISGEESEQQIKMRADRLKISNEQFYLLTETSTQVIF
QEIKKLQPQLVIIDSIQTLQSPLIESAPGSVSQIRETTAEMQRFAKETNTPVFLIGHITKDGVIAGPKILEHMVDTVLQF
EGDQHYAYRILRTIKNRFGSTSELGIYEMTGQGLRQVSNPSEILISQREDMLSGIAIAATIEGLRPLLVEVQALVTQSVY
GTPQRTATGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLRVEDPSIDLAVLCALLSSYEDAGIPHKYCFAGEVGLS
GEVRAVNRIEQRIAEAEKLGFEKIFISKYHQKGLDFSKFNIEVVALGRVEEVYRLLF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=380175 FW415_RS04960 WP_148383184.1 1176482..1177855(+) (radA) [Chitinophaga sp. XS-30]
ATGGCTAAAATCAAAACGGCTTTTTTTTGTCAGAACTGCGGATATGAATCGGCAAAATGGACGGGTAAATGTCCTTCCTG
CAATCAGTGGAACACTTTTGTAGAGGAAAAGGTACAGAAAGATATGCCCTTGCGTCAACAGGAATGGAAAGAGAAACCGG
AGAGCCCGCGTGCGCCGAAAGTAGTGAACCTGGAAGCAGTGGAAGGCATTGCAGAAAAAAGATGGCTTACACCTGACGCC
GAATTGAACAGAGTGCTGGGAGGCGGCATAGTGGCGGGTTCGCTGGTGCTGGTGGGTGGGGAGCCGGGCATCGGAAAGTC
TACCCTCTTCCTGCAGAACGCATTGCTGCTGAACGGGATCAGAACGCTTTATATCAGCGGAGAGGAAAGCGAACAGCAGA
TCAAAATGCGGGCAGACCGTTTGAAGATAAGTAACGAACAATTTTACCTGCTGACGGAAACGTCCACACAAGTCATCTTC
CAGGAAATAAAAAAGCTGCAACCGCAGCTGGTGATCATCGACTCTATCCAGACGCTGCAATCCCCGCTGATCGAATCAGC
ACCGGGAAGCGTGTCGCAGATCAGGGAAACGACCGCCGAAATGCAACGTTTTGCCAAGGAAACGAACACCCCTGTTTTCC
TCATCGGCCACATTACCAAGGACGGGGTCATTGCCGGCCCGAAGATATTGGAACACATGGTGGACACCGTGCTCCAGTTT
GAAGGGGACCAGCATTATGCCTACCGCATCCTGCGTACGATAAAGAACCGCTTTGGGTCCACATCGGAGCTGGGCATCTA
CGAAATGACGGGGCAGGGCCTCCGGCAGGTGAGCAATCCCTCCGAAATACTGATCTCGCAAAGGGAGGATATGCTCAGCG
GTATTGCCATCGCAGCCACTATTGAAGGGCTGCGACCGCTGCTCGTGGAGGTGCAGGCGCTCGTTACCCAATCGGTGTAC
GGTACGCCGCAACGTACCGCTACGGGGTTCGATCTGCGCAGGCTGCAACTGCTGTTGGCCGTACTGGAAAAACGCGGCGG
CTTTCATTTCGGGGTGAAGGATGTGTTTCTCAATATCGCGGGTGGCCTGAGGGTGGAAGATCCTTCCATTGACCTTGCGG
TACTTTGTGCGCTGTTATCCTCTTATGAAGATGCGGGCATTCCCCATAAATACTGCTTCGCGGGGGAAGTGGGGCTGAGC
GGGGAGGTTCGTGCCGTGAACCGCATCGAACAGCGTATTGCCGAAGCGGAGAAGCTGGGCTTCGAGAAAATATTTATATC
CAAATACCATCAAAAAGGACTTGATTTCAGTAAATTCAATATTGAAGTCGTTGCCCTCGGAAGAGTGGAAGAGGTGTACC
GGCTGCTGTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(77-222)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

50.108

100

0.505
  radA Streptococcus pneumoniae Rx1

50.108

100

0.505
  radA Streptococcus pneumoniae D39

50.108

100

0.505
  radA Streptococcus pneumoniae TIGR4

50.108

100

0.505
  radA Streptococcus mitis NCTC 12261

50.108

100

0.505
  radA Streptococcus mitis SK321

49.892

100

0.503
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

99.781

0.501

Multiple sequence alignment