Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FXN59_RS10450 Genome accession   NZ_CP043004
Coordinates   2013330..2013851 (-) Length   173 a.a.
NCBI ID   WP_187372986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2008330..2018851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS10435 (FXN59_10435) comQ 2011631..2011933 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  FXN59_RS10440 (FXN59_10440) - 2011908..2012603 (-) 696 WP_148327089.1 DUF2572 family protein -
  FXN59_RS10445 (FXN59_10445) - 2012600..2013343 (-) 744 Protein_2006 hypothetical protein -
  FXN59_RS10450 (FXN59_10450) comN 2013330..2013851 (-) 522 WP_187372986.1 type II secretion system protein Machinery gene
  FXN59_RS10465 (FXN59_10465) pal 2014557..2015024 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN59_RS10470 (FXN59_10470) tolB 2015039..2016319 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN59_RS10475 (FXN59_10475) tolA 2016354..2017571 (-) 1218 WP_151294895.1 cell envelope integrity protein TolA -
  FXN59_RS10480 (FXN59_10480) tolR 2017588..2018010 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  FXN59_RS10485 (FXN59_10485) tolQ 2018096..2018785 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19921.10 Da        Isoelectric Point: 8.4908

>NTDB_id=380149 FXN59_RS10450 WP_187372986.1 2013330..2013851(-) (comN) [Aggregatibacter actinomycetemcomitans strain HK_973]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGRRWCLTAQ
IKNSHLCDCLNPVACPQNVFAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=380149 FXN59_RS10450 WP_187372986.1 2013330..2013851(-) (comN) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGCAAAAGGGATTCACTTTGCTGGAAATGTTAATTGCATTATTTATTATCAGCCTGTTGCTGACGCTTGCTTTACCAGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAGGCGCTGGTGTTTGACGGCGCAA
ATTAAAAATAGCCATTTGTGTGACTGTTTAAATCCTGTTGCTTGCCCGCAAAATGTTTTCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACCGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAGGCCAATCAGCAGCGCACGTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment