Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FVF69_RS06100 Genome accession   NZ_CP043002
Coordinates   1357443..1359281 (+) Length   612 a.a.
NCBI ID   WP_032746932.1    Uniprot ID   A0A4R0T302
Organism   Bifidobacterium longum strain BAMA-B05     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352443..1364281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVF69_RS06075 - 1353724..1354287 (-) 564 WP_021975086.1 BRO family protein -
  FVF69_RS06080 - 1354649..1355170 (+) 522 WP_131212845.1 MarR family winged helix-turn-helix transcriptional regulator -
  FVF69_RS06090 rcrP 1355357..1357228 (+) 1872 WP_148405805.1 ABC transporter ATP-binding protein Regulator
  FVF69_RS06100 rcrQ 1357443..1359281 (+) 1839 WP_032746932.1 ABC transporter ATP-binding protein Regulator
  FVF69_RS06105 - 1359434..1360624 (-) 1191 WP_373367016.1 FAD:protein FMN transferase -
  FVF69_RS06110 - 1360563..1361981 (+) 1419 WP_049137425.1 MFS transporter -
  FVF69_RS06125 rsmI 1362562..1363572 (+) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FVF69_RS10515 - 1363599..1363976 (-) 378 WP_007052935.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67057.44 Da        Isoelectric Point: 5.9871

>NTDB_id=380104 FVF69_RS06100 WP_032746932.1 1357443..1359281(+) (rcrQ) [Bifidobacterium longum strain BAMA-B05]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=380104 FVF69_RS06100 WP_032746932.1 1357443..1359281(+) (rcrQ) [Bifidobacterium longum strain BAMA-B05]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAATCGATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGGCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTAGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGCCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATCCGCCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATTGTGGCGTTCATGATGTACATCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0T302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.741

96.078

0.516

Multiple sequence alignment