Detailed information NTG0380103

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: FVF69_RS06090
• Genome accession: NZ_CP043002
• Coordinates: 1355357..1357228 (+)
• Length: 623 a.a.
• NCBI ID: WP_148405805.1
• Uniprot ID: -
• Organism: Bifidobacterium longum strain BAMA-B05
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1320801..1355170	1355357..1357228	flank	187

Gene organization within MGE regions

Location: 1320801..1357228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVF69_RS05980	-	1320801..1321514 (+)	714	WP_008783186.1	histidine phosphatase family protein	-
FVF69_RS05985	-	1321901..1323247 (+)	1347	WP_013583013.1	ABC transporter substrate-binding protein	-
FVF69_RS05990	-	1323501..1324517 (-)	1017	WP_007054086.1	LacI family DNA-binding transcriptional regulator	-
FVF69_RS05995	-	1324900..1325754 (+)	855	WP_007052964.1	carbohydrate ABC transporter permease	-
FVF69_RS06000	-	1325754..1326596 (+)	843	WP_007056144.1	carbohydrate ABC transporter permease	-
FVF69_RS06005	-	1326655..1327260 (+)	606	WP_007056973.1	YesL family protein	-
FVF69_RS06015	-	1327594..1330791 (+)	3198	WP_131211021.1	alpha-L-arabinofuranosidase	-
FVF69_RS06020	-	1330917..1332005 (-)	1089	WP_256755089.1	ISL3 family transposase	-
FVF69_RS06025	-	1331959..1332234 (+)	276	Protein_1126	transposase	-
FVF69_RS06030	-	1332376..1333788 (+)	1413	WP_008783193.1	ATP-binding protein	-
FVF69_RS06035	-	1333851..1335332 (-)	1482	WP_131211020.1	amino acid permease	-
FVF69_RS06040	-	1335554..1336123 (-)	570	WP_007052949.1	TetR/AcrR family transcriptional regulator	-
FVF69_RS06045	-	1336267..1336968 (+)	702	WP_013141473.1	ABC transporter ATP-binding protein	-
FVF69_RS06050	-	1337057..1340788 (+)	3732	WP_165506497.1	ABC transporter permease	-
FVF69_RS06055	-	1340976..1342499 (+)	1524	WP_131264912.1	amino acid permease	-
FVF69_RS06060	-	1342839..1344335 (+)	1497	WP_007052945.1	RNA-binding domain-containing protein	-
FVF69_RS06065	-	1344639..1349180 (+)	4542	WP_131264910.1	exo-beta-1,6-galactobiohydrolase	-
FVF69_RS10595	-	1349754..1349819 (+)	66	WP_349816200.1	hypothetical protein	-
FVF69_RS10600	-	1351522..1353228 (+)	1707	WP_367302642.1	bacterial Ig-like domain-containing protein	-
FVF69_RS06075	-	1353724..1354287 (-)	564	WP_021975086.1	BRO family protein	-
FVF69_RS06080	-	1354649..1355170 (+)	522	WP_131212845.1	MarR family winged helix-turn-helix transcriptional regulator	-
FVF69_RS06090	rcrP	1355357..1357228 (+)	1872	WP_148405805.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 623 a.a.
• Molecular weight: 68040.69 Da
• Isoelectric Point: 5.6649

>NTDB_id=380103 FVF69_RS06090 WP_148405805.1 1355357..1357228(+) (rcrP) [Bifidobacterium longum strain BAMA-B05]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKLPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTNTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFRGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide

• Length: 1872 bp

>NTDB_id=380103 FVF69_RS06090 WP_148405805.1 1355357..1357228(+) (rcrP) [Bifidobacterium longum strain BAMA-B05]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATTGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCAACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAGGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (359-543)

• ABC transporter transmembrane region (ABC_membrane) (60-292)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	48.183	100	0.49