Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TOCE_RS10690 Genome accession   NC_014377
Coordinates   2125772..2127121 (-) Length   449 a.a.
NCBI ID   WP_013276844.1    Uniprot ID   D9S0H8
Organism   Thermosediminibacter oceani DSM 16646     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2120772..2132121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOCE_RS10660 (Toce_2116) - 2121580..2122053 (-) 474 WP_013276838.1 septal ring lytic transglycosylase RlpA family protein -
  TOCE_RS10665 (Toce_2117) ispF 2122244..2122717 (-) 474 WP_013276839.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  TOCE_RS10670 (Toce_2118) ispD 2122724..2123422 (-) 699 WP_013276840.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  TOCE_RS10675 (Toce_2119) - 2123438..2124520 (-) 1083 WP_013276841.1 PIN/TRAM domain-containing protein -
  TOCE_RS10680 (Toce_2120) - 2124661..2125137 (-) 477 WP_013276842.1 CarD family transcriptional regulator -
  TOCE_RS10685 (Toce_2121) - 2125363..2125758 (+) 396 WP_013276843.1 hypothetical protein -
  TOCE_RS10690 (Toce_2122) radA 2125772..2127121 (-) 1350 WP_013276844.1 DNA repair protein RadA Machinery gene
  TOCE_RS10695 (Toce_2123) - 2127215..2129659 (-) 2445 WP_013276845.1 ATP-dependent Clp protease ATP-binding subunit -
  TOCE_RS10700 (Toce_2124) - 2129670..2130722 (-) 1053 WP_013276846.1 protein arginine kinase -
  TOCE_RS10705 (Toce_2125) - 2130738..2131256 (-) 519 WP_013276847.1 UvrB/UvrC motif-containing protein -
  TOCE_RS10710 (Toce_2126) - 2131253..2131735 (-) 483 WP_013276848.1 CtsR family transcriptional regulator -
  TOCE_RS10715 (Toce_2127) - 2131859..2132098 (-) 240 WP_013276849.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48606.00 Da        Isoelectric Point: 6.5071

>NTDB_id=38010 TOCE_RS10690 WP_013276844.1 2125772..2127121(-) (radA) [Thermosediminibacter oceani DSM 16646]
MKSKRRFVCQQCGFESVKWMGRCPDCGSWNSFAEEQVTRSAGVSFLSEHQKPLLLSEIDYSEEERIKTGLLELDRVLGGG
IVPGSLVLVGGDPGIGKSTLMLQAAAKLGATGKIVLYVTGEESAKQVKLRAERLGISGGHLYIVAENNLDVVEKHVRELS
PQVVIIDSIQTAYLPELESAPGSISQVREATLRLLKLSKETGTAVFIVGHVTKEGSLAGPRTLEHMVDCVLYFEGERYQS
YRVLRAVKNRFGSTNEIGIFEMQTSGLAEVDSPSKFLLSGRLGNSPGSAVVCTMEGTRPLLVEVQALTCPTGFNLPRRQT
SGIDYNRAALLIAVLEKKLGLNLAHEDVYINAAGGIKLTEPAVDLAVITAIVSSFKNKPVRDVVIIGEVGLAGEVRSVGY
IEKRVNEAAKLGFKEAIIPYDNMRDLKNTVGIDISGVKELKDAIEAAFD

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=38010 TOCE_RS10690 WP_013276844.1 2125772..2127121(-) (radA) [Thermosediminibacter oceani DSM 16646]
TTGAAAAGTAAAAGGCGCTTTGTCTGCCAACAGTGCGGCTTTGAGTCGGTCAAGTGGATGGGCAGATGCCCCGATTGCGG
AAGCTGGAACAGCTTTGCGGAAGAGCAGGTAACTCGAAGTGCCGGAGTGTCATTTCTTTCTGAACACCAAAAACCCCTCC
TTTTAAGCGAAATAGATTATTCGGAGGAGGAGCGGATAAAGACGGGTCTTTTGGAGCTCGACAGGGTGCTAGGTGGGGGT
ATCGTTCCCGGCAGCCTGGTGCTGGTGGGTGGAGACCCGGGTATAGGGAAATCCACGCTGATGCTGCAGGCGGCGGCAAA
GCTCGGCGCCACCGGGAAAATTGTTCTCTACGTCACCGGCGAAGAATCGGCCAAACAGGTAAAGCTGCGAGCCGAAAGGC
TGGGGATTTCCGGCGGGCACCTGTACATAGTAGCGGAAAACAATTTGGATGTAGTGGAAAAGCATGTAAGGGAGCTTTCG
CCCCAGGTGGTCATAATAGATTCCATACAGACCGCCTACCTTCCAGAGCTCGAGTCAGCTCCGGGCAGCATCAGCCAGGT
AAGGGAAGCCACCCTTCGGCTTCTCAAACTTTCCAAGGAAACGGGCACCGCCGTATTCATAGTGGGACACGTCACCAAAG
AGGGGAGTCTCGCGGGCCCCAGGACTTTGGAGCACATGGTCGACTGCGTGCTGTATTTTGAAGGCGAGAGATACCAGTCT
TACCGCGTGCTGAGGGCGGTGAAGAACAGATTCGGGTCAACTAACGAGATAGGCATTTTCGAGATGCAGACTTCCGGGCT
GGCGGAAGTTGACAGTCCGTCTAAATTCCTGCTTTCGGGCAGGCTCGGAAATTCTCCGGGTTCTGCGGTGGTGTGCACCA
TGGAAGGTACAAGGCCCCTGCTGGTAGAAGTCCAGGCGCTTACCTGCCCCACCGGATTCAACCTTCCCCGCCGGCAGACT
TCAGGTATAGATTACAACAGGGCCGCCCTTCTGATCGCCGTTTTGGAAAAAAAATTAGGGCTTAATCTCGCCCATGAAGA
CGTTTATATCAATGCGGCCGGCGGGATAAAACTCACCGAACCGGCCGTGGATCTTGCGGTTATCACCGCAATAGTATCGA
GTTTTAAGAACAAACCGGTAAGGGATGTGGTGATCATAGGGGAAGTGGGTCTTGCGGGCGAGGTAAGGTCCGTAGGCTAC
ATTGAAAAGAGGGTGAACGAAGCCGCAAAGCTAGGCTTTAAAGAAGCGATAATCCCCTATGACAACATGAGGGATTTAAA
AAATACGGTAGGCATCGACATTTCGGGGGTAAAGGAACTGAAAGACGCTATAGAAGCCGCTTTTGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-215)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(348-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9S0H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

54.767

100

0.55
  radA Streptococcus mitis SK321

54.767

100

0.55
  radA Streptococcus mitis NCTC 12261

54.767

100

0.55
  radA Streptococcus pneumoniae TIGR4

54.767

100

0.55
  radA Streptococcus pneumoniae D39

54.767

100

0.55
  radA Streptococcus pneumoniae R6

54.767

100

0.55
  radA Bacillus subtilis subsp. subtilis str. 168

54.405

100

0.55

Multiple sequence alignment