Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FRD49_RS17160 Genome accession   NZ_CP042994
Coordinates   3577605..3577931 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter nosocomialis strain J1A     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3572605..3582931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS17140 (FRD49_17140) - 3572703..3573332 (-) 630 WP_032011627.1 FHA domain-containing protein -
  FRD49_RS17145 (FRD49_17145) gspD 3573373..3575649 (-) 2277 WP_004710891.1 type II secretion system secretin GspD -
  FRD49_RS17150 (FRD49_17150) - 3575691..3576530 (-) 840 WP_004710893.1 type II secretion system protein N -
  FRD49_RS17155 (FRD49_17155) gspN 3576530..3577273 (-) 744 WP_032011628.1 type II secretion system protein N -
  FRD49_RS17160 (FRD49_17160) hns 3577605..3577931 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  FRD49_RS17165 (FRD49_17165) - 3578126..3578566 (-) 441 WP_004710900.1 acyl-CoA thioesterase -
  FRD49_RS17170 (FRD49_17170) - 3578574..3579767 (-) 1194 WP_004710901.1 hypothetical protein -
  FRD49_RS17175 (FRD49_17175) - 3579777..3580616 (-) 840 WP_032011629.1 hypothetical protein -
  FRD49_RS17180 (FRD49_17180) - 3580625..3581392 (-) 768 WP_032011630.1 uroporphyrinogen-III synthase -
  FRD49_RS17185 (FRD49_17185) hemC 3581397..3582314 (-) 918 WP_199983357.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=380056 FRD49_RS17160 WP_002053185.1 3577605..3577931(-) (hns) [Acinetobacter nosocomialis strain J1A]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=380056 FRD49_RS17160 WP_002053185.1 3577605..3577931(-) (hns) [Acinetobacter nosocomialis strain J1A]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGCTACCGTAACAAAAACAACTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATCGAAAAGGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991

Multiple sequence alignment