Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FRD49_RS02505 Genome accession   NZ_CP042994
Coordinates   513609..514493 (+) Length   294 a.a.
NCBI ID   WP_032012175.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508609..519493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS02480 (FRD49_02480) - 509001..510248 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  FRD49_RS02485 (FRD49_02485) wrbA 510529..511131 (+) 603 WP_212264616.1 NAD(P)H:quinone oxidoreductase -
  FRD49_RS02490 (FRD49_02490) - 511186..511761 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  FRD49_RS02495 (FRD49_02495) - 511833..512546 (-) 714 WP_032012174.1 DUF3108 domain-containing protein -
  FRD49_RS02500 (FRD49_02500) - 512704..513375 (-) 672 WP_022576134.1 hypothetical protein -
  FRD49_RS02505 (FRD49_02505) tonB2 513609..514493 (+) 885 WP_032012175.1 energy transducer TonB Machinery gene
  FRD49_RS02510 (FRD49_02510) ybeY 514582..515058 (-) 477 WP_032012177.1 rRNA maturation RNase YbeY -
  FRD49_RS02515 (FRD49_02515) - 515068..516156 (-) 1089 WP_002050786.1 PhoH family protein -
  FRD49_RS02520 (FRD49_02520) miaB 516194..517645 (-) 1452 WP_002050781.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33658.52 Da        Isoelectric Point: 9.6538

>NTDB_id=380034 FRD49_RS02505 WP_032012175.1 513609..514493(+) (tonB2) [Acinetobacter nosocomialis strain J1A]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFVLLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVRQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDTNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=380034 FRD49_RS02505 WP_032012175.1 513609..514493(+) (tonB2) [Acinetobacter nosocomialis strain J1A]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTGTGCTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCGGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGGGAAGTCCGCCTTATGGTAATTTTAAATGCTCAAGGGGGAATTCGTGCAATCCGTTTA
CTTGAAAGTTCAGGGCATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCGCCGTTTGGTCGTTTTGA
TACAAATATGAAGGATATTTCCGAGCTACGTATTGTACGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.898

100

0.949

Multiple sequence alignment