Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPIN_RS01940 | Genome accession | NC_017372 |
| Coordinates | 387413..388588 (-) | Length | 391 a.a. |
| NCBI ID | WP_000060242.1 | Uniprot ID | - |
| Organism | Helicobacter pylori India7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 382413..393588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPIN_RS01905 (HPIN_01935) | - | 382730..383044 (+) | 315 | WP_000868000.1 | hypothetical protein | - |
| HPIN_RS01910 (HPIN_01940) | - | 383022..383789 (+) | 768 | WP_000602389.1 | RNA polymerase sigma factor FliA | - |
| HPIN_RS01915 (HPIN_01945) | fliM | 383782..384846 (+) | 1065 | WP_000763575.1 | flagellar motor switch protein FliM | - |
| HPIN_RS01920 (HPIN_01950) | fliY | 384850..385722 (+) | 873 | WP_001150628.1 | flagellar motor switch protein FliY | - |
| HPIN_RS01925 (HPIN_01955) | - | 385751..386287 (+) | 537 | WP_000964013.1 | YhcH/YjgK/YiaL family protein | - |
| HPIN_RS01930 (HPIN_01960) | - | 386284..386781 (+) | 498 | WP_000780308.1 | DUF2147 domain-containing protein | - |
| HPIN_RS01935 (HPIN_01965) | fur | 386801..387253 (-) | 453 | WP_000825001.1 | ferric iron uptake transcriptional regulator | - |
| HPIN_RS01940 (HPIN_01970) | rarA | 387413..388588 (-) | 1176 | WP_000060242.1 | replication-associated recombination protein A | Machinery gene |
| HPIN_RS01945 (HPIN_01975) | - | 388585..388956 (-) | 372 | WP_000332994.1 | heat shock protein transcriptional repressor HspR | - |
| HPIN_RS01950 (HPIN_01980) | - | 388966..389832 (-) | 867 | WP_000045816.1 | DnaJ family protein | - |
| HPIN_RS01955 (HPIN_01985) | - | 390000..391250 (+) | 1251 | WP_001199609.1 | hypothetical protein | - |
| HPIN_RS01960 (HPIN_01990) | - | 391346..392182 (-) | 837 | WP_000556212.1 | 5'-3' exonuclease | - |
| HPIN_RS01965 (HPIN_01995) | - | 392437..393333 (-) | 897 | WP_000697600.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43855.52 Da Isoelectric Point: 8.5267
>NTDB_id=37998 HPIN_RS01940 WP_000060242.1 387413..388588(-) (rarA) [Helicobacter pylori India7]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPFLLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIESDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPFLLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIESDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=37998 HPIN_RS01940 WP_000060242.1 387413..388588(-) (rarA) [Helicobacter pylori India7]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATCTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATTATCGCTCGCATGCTAGAGCGCCCTTTTCTTTTATTTAATGCGACGGATTTCAAGCTAGAAGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAATAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGTCTGACGCTAAAACCTATCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAATCTCTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCATTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGTCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATCTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATTATCGCTCGCATGCTAGAGCGCCCTTTTCTTTTATTTAATGCGACGGATTTCAAGCTAGAAGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAATAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGTCTGACGCTAAAACCTATCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAATCTCTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCATTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGTCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.5 |
100 |
0.399 |