Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   FWK48_RS05525 Genome accession   NZ_CP042987
Coordinates   1242480..1244906 (-) Length   808 a.a.
NCBI ID   WP_136121341.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237480..1249906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS05515 (FWK48_05515) rlmKL 1238477..1240633 (-) 2157 WP_136121340.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  FWK48_RS05520 (FWK48_05520) msbA 1240680..1242428 (-) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FWK48_RS05525 (FWK48_05525) rec2 1242480..1244906 (-) 2427 WP_136121341.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FWK48_RS05530 (FWK48_05530) dksA 1245205..1245642 (+) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  FWK48_RS05535 (FWK48_05535) pcnB 1245944..1247317 (+) 1374 WP_247619248.1 polynucleotide adenylyltransferase PcnB -
  FWK48_RS05540 (FWK48_05540) folK 1247314..1247790 (+) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FWK48_RS05545 (FWK48_05545) nagA 1247888..1249036 (-) 1149 WP_132994874.1 N-acetylglucosamine-6-phosphate deacetylase -
  FWK48_RS05550 (FWK48_05550) nagB 1249049..1249855 (-) 807 WP_136121343.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92453.91 Da        Isoelectric Point: 9.5833

>NTDB_id=379860 FWK48_RS05525 WP_136121341.1 1242480..1244906(-) (rec2) [Histophilus somni strain UOC-KLM-ATR-08]
MKFNLDHYLFVILASAMTLLITPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGVGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSYLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGLFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYNVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIADQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHITCQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKVLLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLIFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=379860 FWK48_RS05525 WP_136121341.1 1242480..1244906(-) (rec2) [Histophilus somni strain UOC-KLM-ATR-08]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGCGAGTGCAATGACATTGCTAATTACGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTCAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGGTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCCGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAGGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCTATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGTTAGACAAGGAATTATGGCAACTTTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGTTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGCTTTTTTTAGCATTCTGTTATGCAGAATTAGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTGTGTCGCATATGTCGAGTTTCCTATAATGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGCTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAC
GGTATCGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGCTGGAATATAGCTGATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCGAATGCTGAGTTTATCAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCTCATATTACTTGTCAAAAAGGAAAAATATGGCATTGGCAAGGGTTATATATTGA
AGCCTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAGTACTATTAACGGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCTTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGTCAAATTCGTTTAATATTCAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(210-484)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)

Domain of unknown function (DUF4131) (DUF4131)

(30-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.114

100

0.511

Multiple sequence alignment