Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | HBM80_RS15300 | Genome accession | NZ_CP050400 |
| Coordinates | 3090343..3090858 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain VB11737 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3085343..3095858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBM80_RS15280 (HBM80_15280) | - | 3085662..3087122 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| HBM80_RS15285 (HBM80_15285) | - | 3087399..3088604 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| HBM80_RS15290 (HBM80_15290) | - | 3088623..3088766 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| HBM80_RS15295 (HBM80_15295) | omp38 | 3088891..3089961 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| HBM80_RS15300 (HBM80_15300) | fimT | 3090343..3090858 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| HBM80_RS15305 (HBM80_15305) | - | 3090967..3092142 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| HBM80_RS15310 (HBM80_15310) | - | 3092269..3092712 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| HBM80_RS15315 (HBM80_15315) | - | 3092755..3093108 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| HBM80_RS15320 (HBM80_15320) | - | 3093191..3093676 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| HBM80_RS15325 (HBM80_15325) | - | 3093669..3095312 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=379797 HBM80_RS15300 WP_000477147.1 3090343..3090858(+) (fimT) [Acinetobacter baumannii strain VB11737]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=379797 HBM80_RS15300 WP_000477147.1 3090343..3090858(+) (fimT) [Acinetobacter baumannii strain VB11737]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |