Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPGAM_RS04920 | Genome accession | NC_017371 |
| Coordinates | 1039276..1040523 (+) | Length | 415 a.a. |
| NCBI ID | WP_000735010.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1034276..1045523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS04905 (HPGAM_05100) | - | 1034528..1036477 (+) | 1950 | Protein_963 | type IV secretion system DNA-binding domain-containing protein | - |
| HPGAM_RS04910 (HPGAM_05105) | - | 1036470..1038059 (+) | 1590 | Protein_964 | type IA DNA topoisomerase | - |
| HPGAM_RS04915 (HPGAM_05110) | - | 1038059..1039279 (+) | 1221 | Protein_965 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HPGAM_RS04920 (HPGAM_05115) | comB10 | 1039276..1040523 (+) | 1248 | WP_000735010.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPGAM_RS04925 (HPGAM_05125) | - | 1040596..1040892 (+) | 297 | WP_000395545.1 | hypothetical protein | - |
| HPGAM_RS04930 (HPGAM_05130) | - | 1040882..1041145 (+) | 264 | WP_000578848.1 | hypothetical protein | - |
| HPGAM_RS04935 (HPGAM_05135) | - | 1041142..1041441 (+) | 300 | WP_000660149.1 | hypothetical protein | - |
| HPGAM_RS04940 (HPGAM_05140) | - | 1041441..1042382 (+) | 942 | WP_000625141.1 | CpaF/VirB11 family protein | - |
| HPGAM_RS04945 (HPGAM_05145) | - | 1042379..1042834 (+) | 456 | WP_000795450.1 | hypothetical protein | - |
| HPGAM_RS04950 (HPGAM_05150) | - | 1042831..1043121 (+) | 291 | WP_000159813.1 | hypothetical protein | - |
| HPGAM_RS04955 (HPGAM_05155) | - | 1043122..1043679 (+) | 558 | WP_001167794.1 | hypothetical protein | - |
| HPGAM_RS04960 (HPGAM_05160) | - | 1043680..1045428 (+) | 1749 | WP_001208456.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 415 a.a. Molecular weight: 47002.31 Da Isoelectric Point: 10.0384
>NTDB_id=37967 HPGAM_RS04920 WP_000735010.1 1039276..1040523(+) (comB10) [Helicobacter pylori Gambia94/24]
MKKLLLLLEYKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTISQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKGFNKTLIKPQSPFFNYSTANKDEKTRLVILASRISGQKETQPPISIKDSVSHIKSK
EKRELEKEYGSSGFKTFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAEFF
NEEKEQNNDTKYNYL
MKKLLLLLEYKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTISQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKGFNKTLIKPQSPFFNYSTANKDEKTRLVILASRISGQKETQPPISIKDSVSHIKSK
EKRELEKEYGSSGFKTFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAEFF
NEEKEQNNDTKYNYL
Nucleotide
Download Length: 1248 bp
>NTDB_id=37967 HPGAM_RS04920 WP_000735010.1 1039276..1040523(+) (comB10) [Helicobacter pylori Gambia94/24]
ATGAAAAAACTTCTTTTACTCTTGGAGTATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGTATTAAGAATAAAATAGATACCATCAGTCAAGTGAAGCCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAGTTACCAAATTTGCCTAAGGGTTTTAA
TAAAACACTTATCAAACCACAAAGTCCATTTTTCAACTACAGTACCGCCAACAAAGATGAAAAAACCCGTTTGGTGATTT
TAGCGTCTCGTATTAGCGGCCAAAAAGAAACGCAACCTCCCATTTCTATAAAGGATAGCGTTTCTCACATAAAATCTAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAACTTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAATAAAATAGGAGAATACCGATTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTTAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGACTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGCTTTAATCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATTAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGGTCTTAGCGGAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATATAACTATTTATAA
ATGAAAAAACTTCTTTTACTCTTGGAGTATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGTATTAAGAATAAAATAGATACCATCAGTCAAGTGAAGCCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAGTTACCAAATTTGCCTAAGGGTTTTAA
TAAAACACTTATCAAACCACAAAGTCCATTTTTCAACTACAGTACCGCCAACAAAGATGAAAAAACCCGTTTGGTGATTT
TAGCGTCTCGTATTAGCGGCCAAAAAGAAACGCAACCTCCCATTTCTATAAAGGATAGCGTTTCTCACATAAAATCTAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAACTTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAATAAAATAGGAGAATACCGATTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTTAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGACTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGCTTTAATCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATTAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGGTCTTAGCGGAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATATAACTATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
45.316 |
95.181 |
0.431 |