Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPGAM_RS03950 Genome accession   NC_017371
Coordinates   833481..835001 (-) Length   506 a.a.
NCBI ID   WP_000611041.1    Uniprot ID   -
Organism   Helicobacter pylori Gambia94/24     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828481..840001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPGAM_RS03940 (HPGAM_04075) - 830134..831348 (-) 1215 WP_001033150.1 restriction endonuclease subunit S -
  HPGAM_RS03945 (HPGAM_04080) - 831395..833456 (-) 2062 Protein_779 heavy metal translocating P-type ATPase -
  HPGAM_RS03950 (HPGAM_04085) comM 833481..835001 (-) 1521 WP_000611041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPGAM_RS03955 (HPGAM_04090) def 835007..835531 (-) 525 WP_001185864.1 peptide deformylase -
  HPGAM_RS03960 (HPGAM_04095) clpP 835536..836123 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPGAM_RS03965 (HPGAM_04100) tig 836144..837499 (-) 1356 WP_001047749.1 trigger factor -
  HPGAM_RS03970 (HPGAM_04105) - 837612..838448 (-) 837 WP_001037731.1 outer membrane protein -
  HPGAM_RS03975 (HPGAM_04110) hpaA 838470..839252 (-) 783 WP_000855936.1 flagellar sheath lipoprotein HpaA -
  HPGAM_RS03980 (HPGAM_04115) moaC 839371..839847 (-) 477 WP_001131572.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57243.17 Da        Isoelectric Point: 8.2333

>NTDB_id=37962 HPGAM_RS03950 WP_000611041.1 833481..835001(-) (comM) [Helicobacter pylori Gambia94/24]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQATERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=37962 HPGAM_RS03950 WP_000611041.1 833481..835001(-) (comM) [Helicobacter pylori Gambia94/24]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCTGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAACTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCCTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTCTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTCATCCCTAATTTACAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTACGCCTTAGACTTTAAGGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGCTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTGTTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTGCTCAGCGCAACTAAAGCATGCCGTTGCCAAG
ATAGGGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGACTGAAAGGTTTAATCTGTCCATGCGTTCTATTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTAAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.399

100

0.368