Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | HBK86_RS14950 | Genome accession | NZ_CP050385 |
| Coordinates | 3074071..3074586 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477149.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain VB82 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3069071..3079586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBK86_RS14930 (HBK86_14930) | - | 3069403..3070863 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| HBK86_RS14935 (HBK86_14935) | - | 3071140..3072345 (+) | 1206 | WP_000512708.1 | RtcB family protein | - |
| HBK86_RS14940 (HBK86_14940) | - | 3072364..3072507 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| HBK86_RS14945 (HBK86_14945) | omp38 | 3072630..3073691 (-) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| HBK86_RS14950 (HBK86_14950) | fimT | 3074071..3074586 (+) | 516 | WP_000477149.1 | GspH/FimT family pseudopilin | Machinery gene |
| HBK86_RS14955 (HBK86_14955) | - | 3074695..3075870 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| HBK86_RS14960 (HBK86_14960) | - | 3075997..3076440 (+) | 444 | WP_001176585.1 | VOC family protein | - |
| HBK86_RS14965 (HBK86_14965) | - | 3076483..3076836 (-) | 354 | WP_000457785.1 | DMT family transporter | - |
| HBK86_RS14970 (HBK86_14970) | - | 3076918..3077403 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| HBK86_RS14975 (HBK86_14975) | - | 3077396..3079039 (-) | 1644 | WP_000281763.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19633.88 Da Isoelectric Point: 8.8196
>NTDB_id=379564 HBK86_RS14950 WP_000477149.1 3074071..3074586(+) (fimT) [Acinetobacter baumannii strain VB82]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=379564 HBK86_RS14950 WP_000477149.1 3074071..3074586(+) (fimT) [Acinetobacter baumannii strain VB82]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |