Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPGAM_RS02210 | Genome accession | NC_017371 |
| Coordinates | 443477..444652 (-) | Length | 391 a.a. |
| NCBI ID | WP_000059606.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 438477..449652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS02175 | - | 438801..439115 (+) | 315 | WP_001265943.1 | hypothetical protein | - |
| HPGAM_RS02180 (HPGAM_02235) | - | 439093..439860 (+) | 768 | WP_000602344.1 | RNA polymerase sigma factor FliA | - |
| HPGAM_RS02185 (HPGAM_02240) | fliM | 439853..440917 (+) | 1065 | WP_000763586.1 | flagellar motor switch protein FliM | - |
| HPGAM_RS02190 (HPGAM_02245) | fliY | 440921..441778 (+) | 858 | WP_001150648.1 | flagellar motor switch protein FliY | - |
| HPGAM_RS02195 (HPGAM_02250) | - | 441807..442343 (+) | 537 | WP_000964020.1 | YhcH/YjgK/YiaL family protein | - |
| HPGAM_RS02200 (HPGAM_02255) | - | 442340..442843 (+) | 504 | WP_000780234.1 | DUF2147 domain-containing protein | - |
| HPGAM_RS02205 (HPGAM_02260) | fur | 442865..443317 (-) | 453 | WP_001253271.1 | ferric iron uptake transcriptional regulator | - |
| HPGAM_RS02210 (HPGAM_02265) | rarA | 443477..444652 (-) | 1176 | WP_000059606.1 | replication-associated recombination protein A | Machinery gene |
| HPGAM_RS02215 (HPGAM_02270) | - | 444649..445020 (-) | 372 | WP_000272469.1 | heat shock protein transcriptional repressor HspR | - |
| HPGAM_RS02220 (HPGAM_02275) | - | 445030..445896 (-) | 867 | WP_000045897.1 | DnaJ family protein | - |
| HPGAM_RS02225 (HPGAM_02280) | - | 446064..447314 (+) | 1251 | WP_001199534.1 | hypothetical protein | - |
| HPGAM_RS02230 (HPGAM_02290) | - | 447552..448418 (-) | 867 | WP_080005434.1 | 5'-3' exonuclease | - |
| HPGAM_RS02235 (HPGAM_02295) | - | 448644..449540 (-) | 897 | WP_000697602.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43809.53 Da Isoelectric Point: 8.2181
>NTDB_id=37956 HPGAM_RS02210 WP_000059606.1 443477..444652(-) (rarA) [Helicobacter pylori Gambia94/24]
MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLECPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDRLCDK
ALTLLQKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLISALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSPQGIGFEKTLLEWLDKIRN
MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLECPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDRLCDK
ALTLLQKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLISALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSPQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=37956 HPGAM_RS02210 WP_000059606.1 443477..444652(-) (rarA) [Helicobacter pylori Gambia94/24]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACACCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCTTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGTGCCCCATTCTTTTGTTTAATGCGACGGATTTTAAGTTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGAGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTACTTCAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTATTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCCTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTACTCTACCCTATCCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTATCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTCCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACACCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCTTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGTGCCCCATTCTTTTGTTTAATGCGACGGATTTTAAGTTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGAGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTACTTCAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTATTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCCTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTACTCTACCCTATCCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTATCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTCCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
38.35 |
100 |
0.404 |