Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FED50_RS28915 Genome accession   NZ_CP042929
Coordinates   5223696..5225045 (-) Length   449 a.a.
NCBI ID   WP_000225359.1    Uniprot ID   -
Organism   Bacillus cereus strain G1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5218696..5230045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED50_RS28880 - 5218878..5219573 (-) 696 WP_000466505.1 hypothetical protein -
  FED50_RS28885 - 5219560..5220348 (-) 789 WP_000120052.1 hypothetical protein -
  FED50_RS28890 - 5220376..5220945 (-) 570 WP_001211060.1 hypothetical protein -
  FED50_RS28895 - 5221050..5221532 (-) 483 WP_000023374.1 hypothetical protein -
  FED50_RS28900 raiA 5221803..5222345 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  FED50_RS28905 cspC 5222668..5222865 (-) 198 WP_001990088.1 cold shock protein CspC -
  FED50_RS28910 - 5222992..5223696 (-) 705 WP_013142274.1 ComF family protein -
  FED50_RS28915 comFA 5223696..5225045 (-) 1350 WP_000225359.1 ATP-dependent helicase ComFA Machinery gene
  FED50_RS28920 - 5225410..5226480 (-) 1071 WP_088053892.1 endo-1,4-beta-xylanase -
  FED50_RS28925 - 5226627..5227175 (-) 549 WP_088053893.1 DapH/DapD/GlmU-related protein -
  FED50_RS28930 - 5227884..5229329 (-) 1446 WP_140387004.1 C40 family peptidase -
  FED50_RS28935 - 5229484..5229798 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51115.96 Da        Isoelectric Point: 9.9910

>NTDB_id=379453 FED50_RS28915 WP_000225359.1 5223696..5225045(-) (comFA) [Bacillus cereus strain G1-1]
MVAGKQLLLEELSSDLQRKLNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=379453 FED50_RS28915 WP_000225359.1 5223696..5225045(-) (comFA) [Bacillus cereus strain G1-1]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

93.096

0.49

Multiple sequence alignment