Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FED50_RS22880 Genome accession   NZ_CP042929
Coordinates   4119727..4120161 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain G1-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4114727..4125161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED50_RS22865 - 4115903..4116460 (+) 558 WP_000062059.1 PadR family transcriptional regulator -
  FED50_RS22870 metE 4116974..4119262 (+) 2289 WP_001007608.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FED50_RS22875 comJ 4119301..4119690 (-) 390 WP_000424030.1 competence protein ComJ -
  FED50_RS22880 nucA/comI 4119727..4120161 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  FED50_RS22885 - 4120388..4121137 (+) 750 WP_000388471.1 DUF3967 domain-containing protein -
  FED50_RS22890 kinB 4121176..4122450 (-) 1275 WP_147716742.1 sporulation sensor histidine kinase KinB -
  FED50_RS22895 - 4122761..4122961 (+) 201 WP_000929278.1 hypothetical protein -
  FED50_RS22900 - 4123084..4124247 (+) 1164 WP_000434582.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=379438 FED50_RS22880 WP_000811494.1 4119727..4120161(-) (nucA/comI) [Bacillus cereus strain G1-1]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=379438 FED50_RS22880 WP_000811494.1 4119727..4120161(-) (nucA/comI) [Bacillus cereus strain G1-1]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGTTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment