Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FED50_RS09820 Genome accession   NZ_CP042929
Coordinates   1572993..1573595 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain G1-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567993..1578595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED50_RS09800 dnaD 1568314..1569021 (+) 708 WP_000728552.1 DNA replication protein DnaD -
  FED50_RS09805 nth 1569037..1569684 (+) 648 WP_000933034.1 endonuclease III -
  FED50_RS09810 - 1569688..1570206 (+) 519 WP_000442650.1 YpoC family protein -
  FED50_RS09815 - 1570233..1572926 (-) 2694 WP_001283092.1 PBP1A family penicillin-binding protein -
  FED50_RS09820 recU 1572993..1573595 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  FED50_RS09825 - 1573699..1574724 (+) 1026 WP_000495660.1 DUF2515 domain-containing protein -
  FED50_RS31315 - 1574876..1575055 (-) 180 WP_001987054.1 hypothetical protein -
  FED50_RS09830 - 1575141..1575383 (+) 243 WP_001252036.1 hypothetical protein -
  FED50_RS09835 - 1575399..1575743 (+) 345 WP_000786939.1 YppE family protein -
  FED50_RS09840 - 1575770..1575961 (-) 192 WP_000242652.1 YppF family protein -
  FED50_RS09845 - 1576139..1576750 (+) 612 WP_134207747.1 YppG family protein -
  FED50_RS09850 - 1576906..1577334 (+) 429 WP_000546270.1 CotD family spore coat protein -
  FED50_RS09855 - 1577391..1577945 (+) 555 WP_000862908.1 DUF1273 domain-containing protein -
  FED50_RS09860 gpsB 1578043..1578378 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=379427 FED50_RS09820 WP_000155598.1 1572993..1573595(-) (recU) [Bacillus cereus strain G1-1]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=379427 FED50_RS09820 WP_000155598.1 1572993..1573595(-) (recU) [Bacillus cereus strain G1-1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment