Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FVE67_RS01125 Genome accession   NZ_CP042909
Coordinates   221264..222565 (-) Length   433 a.a.
NCBI ID   WP_168718840.1    Uniprot ID   A0A6H1WQH8
Organism   Thermosulfurimonas marina strain SU872     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 216264..227565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE67_RS01085 (FVE67_01075) - 216879..217151 (-) 273 WP_168718832.1 nucleotidyltransferase domain-containing protein -
  FVE67_RS01090 (FVE67_01080) - 217343..217816 (-) 474 WP_168718833.1 TIGR00725 family protein -
  FVE67_RS01095 (FVE67_01085) - 217800..218465 (-) 666 WP_168718834.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  FVE67_RS01100 (FVE67_01090) - 218462..218791 (-) 330 WP_168718835.1 hypothetical protein -
  FVE67_RS01105 (FVE67_01095) - 218853..219197 (+) 345 WP_168718836.1 hypothetical protein -
  FVE67_RS01110 (FVE67_01100) bamD 219194..219937 (-) 744 WP_168718837.1 outer membrane protein assembly factor BamD -
  FVE67_RS01115 (FVE67_01105) trxB 219934..220866 (-) 933 WP_168718838.1 thioredoxin-disulfide reductase -
  FVE67_RS01120 (FVE67_01110) trxA 220867..221193 (-) 327 WP_168718839.1 thioredoxin -
  FVE67_RS01125 (FVE67_01115) radA 221264..222565 (-) 1302 WP_168718840.1 DNA repair protein RadA Machinery gene
  FVE67_RS01130 (FVE67_01120) - 222570..222941 (-) 372 WP_168718841.1 PilZ domain-containing protein -
  FVE67_RS01135 (FVE67_01125) - 223026..224603 (-) 1578 WP_168718842.1 hypothetical protein -
  FVE67_RS01140 (FVE67_01130) - 224775..225332 (-) 558 WP_168718843.1 hypothetical protein -
  FVE67_RS01145 (FVE67_01135) - 225419..226087 (-) 669 WP_168718844.1 cytochrome b/b6 domain-containing protein -
  FVE67_RS01150 (FVE67_01140) - 226111..226887 (-) 777 WP_168718845.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 47325.85 Da        Isoelectric Point: 7.5757

>NTDB_id=379360 FVE67_RS01125 WP_168718840.1 221264..222565(-) (radA) [Thermosulfurimonas marina strain SU872]
MAYRCQECGYRSVKWLGRCPGCGAWESFAEEREEKTPRVSRSSPARILRLSEVSGEGFKRYASGLSEFDRVLGGGLVPGA
LVLIGGDPGIGKSTLLLQVAGRYLSQGLSVIYLCGEESPGQVRLRAERLKIPGELELLPETDLSAALPAVRERHPAILMV
DSIQTVYLPELSSAPGSVSQVREATAALLRLAKEEGVAIFLVGHVTKEGVIAGPRVLEHLVDVVLYFEGERSGPYRLLRA
VKNRFGPVDEIGVFEMREAGLFPVENPSRFFLSGGGGAVFPALEGTRPLLVEIQALVVKSYLASPRRTAVGFDPWRLSML
LAILEKHLGVSFYDRDVFLNVAGGLRLRETGADLAVCAALLGSRLEKDLPEKTVFCGEVGLSGEVRPVLALETRLKEARR
LGFSQAVLPWGQEIRDFPQVRPLRQVRELLDLL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=379360 FVE67_RS01125 WP_168718840.1 221264..222565(-) (radA) [Thermosulfurimonas marina strain SU872]
ATGGCTTATCGCTGTCAGGAATGTGGCTATCGCTCGGTGAAGTGGCTTGGGCGCTGTCCGGGCTGCGGGGCCTGGGAGAG
CTTCGCTGAGGAAAGGGAGGAAAAGACTCCCCGCGTCTCTCGCTCTTCCCCGGCCCGTATCCTGCGGCTTTCCGAGGTCT
CCGGAGAAGGCTTCAAACGCTACGCTTCGGGACTTTCCGAGTTTGATCGGGTCCTGGGGGGAGGGCTGGTCCCCGGGGCC
CTGGTCCTCATCGGGGGAGATCCCGGTATCGGAAAATCCACCCTTCTTCTTCAGGTGGCCGGAAGATATCTTTCCCAGGG
TCTTTCGGTGATCTATCTCTGCGGAGAGGAATCCCCGGGGCAGGTGCGCCTGCGGGCGGAAAGGCTAAAGATTCCGGGAG
AGCTGGAGCTCCTTCCAGAAACCGACCTTTCGGCGGCCCTGCCCGCGGTGCGCGAGCGGCATCCGGCCATCCTCATGGTG
GATTCCATCCAGACCGTCTATCTTCCGGAGCTTTCCTCGGCTCCGGGTTCGGTCTCCCAGGTCCGGGAGGCCACCGCGGC
CCTCCTGCGGCTGGCCAAGGAGGAGGGGGTGGCTATTTTCCTGGTGGGACACGTGACCAAAGAAGGGGTGATCGCCGGTC
CCCGGGTGCTCGAACATCTAGTGGACGTGGTCCTCTACTTTGAAGGGGAAAGGTCCGGGCCCTACCGGCTCCTGCGCGCG
GTGAAGAATCGCTTTGGACCGGTGGACGAGATCGGGGTCTTTGAGATGCGGGAGGCCGGCCTCTTTCCGGTGGAAAATCC
CTCCCGGTTTTTTCTCTCCGGAGGCGGGGGAGCGGTCTTTCCGGCCCTGGAGGGGACGCGCCCCCTTCTGGTAGAGATCC
AGGCCCTGGTGGTCAAGAGCTATCTGGCCTCCCCCCGGCGCACCGCGGTGGGTTTTGATCCCTGGCGGCTTTCCATGCTG
CTGGCCATTCTGGAAAAACACCTGGGGGTTTCTTTTTATGACCGGGACGTCTTTCTCAACGTGGCCGGGGGGCTGCGCCT
TCGGGAAACCGGGGCGGATCTTGCGGTCTGTGCGGCCCTTCTGGGAAGCCGCCTGGAAAAAGATCTTCCGGAAAAGACCG
TATTTTGCGGGGAAGTGGGGCTTTCCGGGGAGGTGCGTCCGGTTCTGGCCCTAGAGACCCGTCTTAAGGAGGCCCGGAGG
CTGGGCTTTTCCCAGGCGGTTTTGCCTTGGGGTCAGGAAATTCGGGATTTTCCTCAAGTACGCCCCCTCCGGCAGGTGCG
GGAACTCCTGGATCTCCTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(3-30)

AAA domain (AAA_25)

(70-209)

Subunit ChlI of Mg-chelatase (ChlI)

(327-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H1WQH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.238

96.998

0.487
  radA Streptococcus pneumoniae Rx1

50.239

96.536

0.485
  radA Streptococcus pneumoniae D39

50.239

96.536

0.485
  radA Streptococcus pneumoniae R6

50.239

96.536

0.485
  radA Streptococcus pneumoniae TIGR4

50.239

96.536

0.485
  radA Streptococcus mitis SK321

50.239

96.536

0.485
  radA Streptococcus mitis NCTC 12261

50.239

96.536

0.485

Multiple sequence alignment