Detailed information NTG0379353

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB725_RS06990
• Genome accession: NZ_CP050335
• Coordinates: 1472559..1473563 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT401
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1467559..1478563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB725_RS06960 (HB725_06970)	fghA	1467651..1468502 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HB725_RS06965 (HB725_06975)	ispF	1468573..1469046 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB725_RS06970 (HB725_06980)	truD	1469043..1470110 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
HB725_RS06975 (HB725_06985)	surE	1470098..1470847 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB725_RS06980 (HB725_06990)	-	1470880..1471515 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB725_RS06985 (HB725_06995)	-	1471561..1472454 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB725_RS06990 (HB725_07000)	rpoS	1472559..1473563 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB725_RS06995 (HB725_07005)	fdxA	1473990..1474313 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB725_RS07000 (HB725_07010)	mutS	1474380..1476947 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HB725_RS07005 (HB725_07015)	-	1477073..1478080 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=379353 HB725_RS06990 WP_003113871.1 1472559..1473563(+) (rpoS) [Pseudomonas aeruginosa strain DVT401]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=379353 HB725_RS06990 WP_003113871.1 1472559..1473563(+) (rpoS) [Pseudomonas aeruginosa strain DVT401]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653