Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HB725_RS02065 Genome accession   NZ_CP050335
Coordinates   443633..443998 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain DVT401     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438633..448998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB725_RS02035 (HB725_02035) pyrR 439255..439767 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HB725_RS02040 (HB725_02040) ruvX 439879..440313 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  HB725_RS02045 (HB725_02045) - 440313..440882 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  HB725_RS02050 (HB725_02050) - 440931..441824 (-) 894 WP_003162015.1 energy transducer TonB -
  HB725_RS02055 (HB725_02055) gshB 441971..442924 (-) 954 WP_003100943.1 glutathione synthase -
  HB725_RS02060 (HB725_02060) pilG 443179..443586 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HB725_RS02065 (HB725_02065) pilH 443633..443998 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HB725_RS02070 (HB725_02070) - 444049..444585 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  HB725_RS02075 (HB725_02075) pilJ 444670..446697 (+) 2028 WP_174816468.1 chemotaxis chemoreceptor PilJ -
  HB725_RS02080 (HB725_02080) pilK 446758..447633 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=379341 HB725_RS02065 WP_003084587.1 443633..443998(+) (pilH) [Pseudomonas aeruginosa strain DVT401]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=379341 HB725_RS02065 WP_003084587.1 443633..443998(+) (pilH) [Pseudomonas aeruginosa strain DVT401]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCTATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364