Detailed information NTG0379252

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB727_RS06730
• Genome accession: NZ_CP050334
• Coordinates: 1437234..1438238 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT410
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1432234..1443238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB727_RS06700 (HB727_06710)	fghA	1432324..1433175 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HB727_RS06705 (HB727_06715)	ispF	1433246..1433719 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB727_RS06710 (HB727_06720)	truD	1433716..1434783 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
HB727_RS06715 (HB727_06725)	surE	1434771..1435520 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB727_RS06720 (HB727_06730)	-	1435553..1436190 (+)	638	Protein_1333	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB727_RS06725 (HB727_06735)	-	1436236..1437129 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB727_RS06730 (HB727_06740)	rpoS	1437234..1438238 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB727_RS06735 (HB727_06745)	fdxA	1438665..1438988 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB727_RS06740 (HB727_06750)	mutS	1439055..1441622 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HB727_RS06745 (HB727_06755)	-	1441748..1442755 (-)	1008	WP_031640472.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=379252 HB727_RS06730 WP_003113871.1 1437234..1438238(+) (rpoS) [Pseudomonas aeruginosa strain DVT410]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=379252 HB727_RS06730 WP_003113871.1 1437234..1438238(+) (rpoS) [Pseudomonas aeruginosa strain DVT410]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653