Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB730_RS25575 Genome accession   NZ_CP050332
Coordinates   5406912..5408354 (-) Length   480 a.a.
NCBI ID   WP_009878058.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT413     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5401912..5413354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB730_RS25545 (HB730_25635) - 5402238..5403353 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  HB730_RS25550 (HB730_25640) - 5403346..5404107 (+) 762 WP_003141218.1 DUF2334 domain-containing protein -
  HB730_RS25555 (HB730_25645) - 5404104..5405105 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HB730_RS25560 (HB730_25650) - 5405080..5405292 (-) 213 WP_003093886.1 hypothetical protein -
  HB730_RS25565 (HB730_25655) purU 5405342..5406193 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  HB730_RS25570 (HB730_25660) mvaT 5406453..5406827 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  HB730_RS25575 (HB730_25665) sbcB 5406912..5408354 (-) 1443 WP_009878058.1 exodeoxyribonuclease I Machinery gene
  HB730_RS25580 (HB730_25670) - 5408579..5409316 (+) 738 WP_003101171.1 hypothetical protein -
  HB730_RS25585 (HB730_25675) - 5409354..5410151 (+) 798 WP_024947524.1 RDD family protein -
  HB730_RS25590 (HB730_25680) - 5410148..5411128 (+) 981 WP_003134640.1 stage II sporulation protein M -
  HB730_RS25595 (HB730_25685) - 5411115..5412686 (+) 1572 WP_043085150.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55535.80 Da        Isoelectric Point: 5.4194

>NTDB_id=379093 HB730_RS25575 WP_009878058.1 5406912..5408354(-) (sbcB) [Pseudomonas aeruginosa strain DVT413]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVDERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=379093 HB730_RS25575 WP_009878058.1 5406912..5408354(-) (sbcB) [Pseudomonas aeruginosa strain DVT413]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAAATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCAGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGATGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGAGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGACGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44