Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HB730_RS19830 Genome accession   NZ_CP050332
Coordinates   4253195..4253791 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain DVT413     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4248195..4258791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB730_RS32780 - 4248589..4248738 (-) 150 Protein_3934 hypothetical protein -
  HB730_RS19810 (HB730_19895) - 4248831..4250414 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  HB730_RS19815 (HB730_19900) - 4250411..4251298 (+) 888 WP_031685965.1 SDR family oxidoreductase -
  HB730_RS19820 (HB730_19905) - 4251372..4251911 (+) 540 WP_023095858.1 CbrC family protein -
  HB730_RS19825 (HB730_19910) - 4251924..4253072 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  HB730_RS19830 (HB730_19915) recR 4253195..4253791 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  HB730_RS19835 (HB730_19920) - 4253870..4254196 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HB730_RS19840 (HB730_19925) dnaX 4254242..4256323 (-) 2082 WP_061194498.1 DNA polymerase III subunit gamma/tau -
  HB730_RS19845 (HB730_19930) - 4256360..4257226 (+) 867 WP_079760483.1 ABC transporter substrate-binding protein -
  HB730_RS19850 (HB730_19935) - 4257935..4258498 (+) 564 WP_019485532.1 recombinase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=379082 HB730_RS19830 WP_003087237.1 4253195..4253791(-) (recR) [Pseudomonas aeruginosa strain DVT413]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=379082 HB730_RS19830 WP_003087237.1 4253195..4253791(-) (recR) [Pseudomonas aeruginosa strain DVT413]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGGACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGGATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48