Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HB730_RS02410 Genome accession   NZ_CP050332
Coordinates   518273..518638 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain DVT413     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513273..523638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB730_RS02380 (HB730_02390) pyrR 513895..514407 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HB730_RS02385 (HB730_02395) ruvX 514519..514953 (-) 435 WP_023098361.1 Holliday junction resolvase RuvX -
  HB730_RS02390 (HB730_02400) - 514953..515522 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  HB730_RS02395 (HB730_02405) - 515571..516464 (-) 894 WP_003084580.1 TonB family protein -
  HB730_RS02400 (HB730_02410) gshB 516611..517564 (-) 954 WP_003100943.1 glutathione synthase -
  HB730_RS02405 (HB730_02415) pilG 517819..518226 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HB730_RS02410 (HB730_02420) pilH 518273..518638 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HB730_RS02415 (HB730_02425) - 518690..519226 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  HB730_RS02420 (HB730_02430) pilJ 519311..521359 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  HB730_RS02425 (HB730_02435) pilK 521420..522295 (+) 876 WP_003128960.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=379042 HB730_RS02410 WP_003084587.1 518273..518638(+) (pilH) [Pseudomonas aeruginosa strain DVT413]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=379042 HB730_RS02410 WP_003084587.1 518273..518638(+) (pilH) [Pseudomonas aeruginosa strain DVT413]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364