Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BACI_RS00305 Genome accession   NC_014335
Coordinates   40438..40722 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus biovar anthracis str. CI     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35438..45722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACI_RS00270 (BACI_c00370) tmk 35592..36218 (+) 627 WP_000677234.1 dTMP kinase -
  BACI_RS00275 (BACI_c00380) holB 36254..37237 (+) 984 WP_000169571.1 DNA polymerase III subunit delta' -
  BACI_RS00280 (BACI_c00390) - 37243..38070 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  BACI_RS00285 (BACI_c00400) yabA 38085..38435 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BACI_RS00290 (BACI_c00410) - 38556..39296 (+) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BACI_RS00295 (BACI_c00420) - 39283..39573 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  BACI_RS00300 (BACI_c00430) rsmI 39542..40417 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BACI_RS00305 (BACI_c00440) abrB 40438..40722 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BACI_RS00310 (BACI_c00450) metG 41186..43195 (+) 2010 WP_071735796.1 methionine--tRNA ligase -
  BACI_RS00315 (BACI_c00460) - 43361..44128 (+) 768 WP_000895823.1 TatD family hydrolase -
  BACI_RS00320 (BACI_c00470) rnmV 44342..44899 (+) 558 WP_000692827.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=37893 BACI_RS00305 WP_000843036.1 40438..40722(-) (abrB) [Bacillus cereus biovar anthracis str. CI]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=37893 BACI_RS00305 WP_000843036.1 40438..40722(-) (abrB) [Bacillus cereus biovar anthracis str. CI]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment