Detailed information NTG0378852

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB733_RS07080
• Genome accession: NZ_CP050330
• Coordinates: 1490457..1491461 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT779
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1485457..1496461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB733_RS07050 (HB733_07055)	fghA	1485549..1486400 (+)	852	WP_174817354.1	S-formylglutathione hydrolase	-
HB733_RS07055 (HB733_07060)	ispF	1486471..1486944 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB733_RS07060 (HB733_07065)	truD	1486941..1488008 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
HB733_RS07065 (HB733_07070)	surE	1487996..1488745 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB733_RS07070 (HB733_07075)	-	1488778..1489413 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB733_RS07075 (HB733_07080)	-	1489459..1490352 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB733_RS07080 (HB733_07085)	rpoS	1490457..1491461 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB733_RS07085 (HB733_07090)	fdxA	1491888..1492211 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB733_RS07090 (HB733_07095)	mutS	1492278..1494845 (-)	2568	WP_114231190.1	DNA mismatch repair protein MutS	-
HB733_RS07095 (HB733_07100)	-	1494971..1495978 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378852 HB733_RS07080 WP_003113871.1 1490457..1491461(+) (rpoS) [Pseudomonas aeruginosa strain DVT779]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378852 HB733_RS07080 WP_003113871.1 1490457..1491461(+) (rpoS) [Pseudomonas aeruginosa strain DVT779]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653