Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FUA48_RS02945 Genome accession   NZ_CP042831
Coordinates   694276..695637 (+) Length   453 a.a.
NCBI ID   WP_147582037.1    Uniprot ID   A0A5B9FP35
Organism   Flavobacterium alkalisoli strain XS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 689276..700637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FUA48_RS02920 (FUA48_02920) - 690005..690811 (-) 807 WP_147582033.1 glycogen/starch synthase -
  FUA48_RS02925 (FUA48_02925) panC 690921..691766 (+) 846 WP_147582034.1 pantoate--beta-alanine ligase -
  FUA48_RS02930 (FUA48_02930) panD 691780..692130 (+) 351 WP_129750368.1 aspartate 1-decarboxylase -
  FUA48_RS02935 (FUA48_02935) - 692135..693094 (+) 960 WP_147582035.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FUA48_RS02940 (FUA48_02940) - 693134..694270 (+) 1137 WP_147582036.1 alpha/beta hydrolase -
  FUA48_RS02945 (FUA48_02945) radA 694276..695637 (+) 1362 WP_147582037.1 DNA repair protein RadA Machinery gene
  FUA48_RS02950 (FUA48_02950) - 695648..697639 (+) 1992 WP_147582038.1 transglycosylase domain-containing protein -
  FUA48_RS02955 (FUA48_02955) - 697708..699345 (+) 1638 WP_147582039.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50093.54 Da        Isoelectric Point: 6.4073

>NTDB_id=378802 FUA48_RS02945 WP_147582037.1 694276..695637(+) (radA) [Flavobacterium alkalisoli strain XS-5]
MAKVKTAFFCQNCGTQYAKWQGQCNSCKEWNTIVEELIQKEEKQSWRPSSPETKRATKPLRIKEIDSSQEIRLNTGDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLRLPYRTLYVSGEESQKQIKMRAERIEHSLDNCFILTETKTQNIFKQI
ETIEPEVVIIDSIQTLHSDFIESSAGSISQIRETTAELIKFAKETNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGTGLREVANPSEILISHKEEELSGTAIATTMEGMRPLMVEIQALVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLAAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDIPVGKDFCFAGEIGLSGEI
RPVNRVEQRIQEAEKLGFSTIFVSKYNKISLKNTLIEIKLVSKIEDVAGHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=378802 FUA48_RS02945 WP_147582037.1 694276..695637(+) (radA) [Flavobacterium alkalisoli strain XS-5]
ATGGCTAAAGTAAAAACAGCTTTTTTTTGCCAGAACTGTGGCACCCAGTATGCCAAATGGCAGGGACAGTGTAATTCATG
TAAAGAATGGAACACCATAGTTGAAGAACTGATACAAAAGGAAGAAAAACAGTCCTGGAGGCCTTCTTCGCCTGAAACAA
AAAGAGCTACTAAGCCATTACGCATAAAAGAAATAGATTCCTCTCAGGAAATTCGCCTTAACACAGGCGACGGAGAGCTA
AACCGGGTATTAGGCGGTGGACTTGTACCCGGCTCACTTACCCTTTTAGGAGGTGAGCCCGGTATAGGTAAAAGTACATT
GCTGTTACAAATCTCATTAAGGCTGCCCTACCGTACGCTTTATGTATCGGGGGAGGAAAGTCAGAAACAGATTAAAATGC
GTGCCGAAAGGATAGAGCATTCTTTAGATAACTGTTTTATACTTACCGAAACCAAAACACAAAACATCTTTAAACAGATT
GAGACCATAGAGCCTGAGGTTGTTATTATAGACTCCATACAGACTCTGCATTCTGATTTTATAGAATCATCGGCAGGAAG
CATTTCACAGATTAGGGAAACCACAGCAGAGCTTATAAAGTTTGCCAAGGAAACCAATGTTCCTGTAATACTGATAGGGC
ACATTACAAAAGACGGCAGCATAGCCGGACCAAAAATACTGGAGCACATGGTAGACACCGTGCTGCAGTTTGAAGGCGAC
CGCAACCATGTATACCGCATCCTTCGTTCGTTAAAGAACCGTTTTGGTTCAACAGCCGAACTGGGTATTTATGAAATGCA
GGGAACAGGATTACGAGAAGTGGCAAACCCGTCAGAAATATTAATATCCCATAAAGAAGAAGAGCTTAGCGGCACCGCCA
TAGCCACCACTATGGAAGGTATGCGTCCGCTTATGGTAGAAATACAGGCTTTGGTCAGTTCTGCTGTATACGGTACTCCG
CAAAGGAGTACTACAGGGTATAATGCTAAAAGACTGAACATGATACTGGCCGTACTGGAAAAAAGGGCAGGTTTCAGGCT
GGCAGCCAAAGACGTTTTCCTTAATATAACAGGAGGCATTAATGTAGATGATCCTGCTATAGACCTAGCCGTAGTTGCTG
CCATACTTTCTTCTAACGAAGATATTCCTGTAGGAAAAGACTTTTGCTTTGCGGGAGAAATTGGTTTATCAGGTGAAATT
CGTCCCGTTAACCGGGTGGAACAACGCATACAAGAGGCCGAAAAACTAGGATTTTCCACTATTTTTGTATCTAAATACAA
TAAGATCTCACTAAAAAACACCCTTATAGAAATTAAGCTGGTTTCTAAGATAGAAGATGTTGCCGGCCATTTGTTTGGGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B9FP35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

50

100

0.503
  radA Streptococcus mitis NCTC 12261

50

100

0.503
  radA Streptococcus pneumoniae R6

50.559

98.675

0.499
  radA Streptococcus pneumoniae TIGR4

50.559

98.675

0.499
  radA Streptococcus pneumoniae D39

50.559

98.675

0.499
  radA Streptococcus pneumoniae Rx1

50.559

98.675

0.499
  radA Bacillus subtilis subsp. subtilis str. 168

50.233

94.923

0.477

Multiple sequence alignment