Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB734_RS02480 Genome accession   NZ_CP050329
Coordinates   547398..548123 (-) Length   241 a.a.
NCBI ID   WP_046638534.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT417     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542398..553123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB734_RS02455 (HB734_02465) - 542864..543379 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  HB734_RS02460 (HB734_02470) rarD 544069..544965 (-) 897 WP_174817739.1 EamA family transporter RarD -
  HB734_RS02465 (HB734_02475) - 545168..546142 (-) 975 WP_046638532.1 serine/threonine protein kinase -
  HB734_RS02470 (HB734_02480) - 546204..546962 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  HB734_RS02475 (HB734_02485) - 547030..547356 (-) 327 WP_046638533.1 YfiM family lipoprotein -
  HB734_RS02480 (HB734_02490) comF 547398..548123 (-) 726 WP_046638534.1 ComF family protein Machinery gene
  HB734_RS02485 (HB734_02495) - 548262..548555 (-) 294 WP_003113255.1 hypothetical protein -
  HB734_RS02490 (HB734_02500) - 548609..549535 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  HB734_RS02495 (HB734_02505) - 549653..550411 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  HB734_RS02500 (HB734_02510) - 550488..550736 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HB734_RS02505 (HB734_02515) - 550747..552123 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HB734_RS02510 (HB734_02520) - 552125..553003 (+) 879 WP_003117928.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27070.59 Da        Isoelectric Point: 10.3916

>NTDB_id=378742 HB734_RS02480 WP_046638534.1 547398..548123(-) (comF) [Pseudomonas aeruginosa strain DVT417]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAVWPLGRLLGELLAEHLRQRYAEGLPHPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=378742 HB734_RS02480 WP_046638534.1 547398..548123(-) (comF) [Pseudomonas aeruginosa strain DVT417]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGTCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCACCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

38.034

97.095

0.369

Multiple sequence alignment