Detailed information NTG0378733

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: HB734_RS00100
• Genome accession: NZ_CP050329
• Coordinates: 21212..22237 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa strain DVT417
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16212..27237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB734_RS00075 (HB734_00075)	-	16410..16727 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
HB734_RS00080 (HB734_00080)	trkA	16876..18249 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
HB734_RS00085 (HB734_00085)	rsmB	18277..19571 (-)	1295	Protein_16	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
HB734_RS00090 (HB734_00090)	fmt	19568..20512 (-)	945	WP_033940716.1	methionyl-tRNA formyltransferase	-
HB734_RS00095 (HB734_00095)	def	20567..21073 (-)	507	WP_003107059.1	peptide deformylase	-
HB734_RS00100 (HB734_00100)	tsaP	21212..22237 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
HB734_RS00105 (HB734_00105)	dprA	22372..23459 (+)	1088	Protein_20	DNA-processing protein DprA	-
HB734_RS00110 (HB734_00110)	-	23500..24057 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
HB734_RS00115 (HB734_00115)	-	24067..25044 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
HB734_RS00120 (HB734_00120)	hemF	25235..26152 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
HB734_RS00125 (HB734_00125)	aroE	26210..27034 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=378733 HB734_RS00100 WP_003097294.1 21212..22237(+) (tsaP) [Pseudomonas aeruginosa strain DVT417]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=378733 HB734_RS00100 WP_003097294.1 21212..22237(+) (tsaP) [Pseudomonas aeruginosa strain DVT417]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCTTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATTGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393