Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACAN_RS09035 Genome accession   NZ_CP042812
Coordinates   1825771..1827120 (+) Length   449 a.a.
NCBI ID   WP_079577450.1    Uniprot ID   -
Organism   Malaciobacter canalis strain LMG 29148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1820771..1832120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAN_RS09015 (ACAN_1809) - 1821420..1821974 (-) 555 WP_099333509.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACAN_RS09020 (ACAN_1810) - 1821971..1822867 (-) 897 WP_228150598.1 DMT family transporter -
  ACAN_RS09025 (ACAN_1811) - 1822916..1823515 (-) 600 WP_196778496.1 Crp/Fnr family transcriptional regulator -
  ACAN_RS09030 (ACAN_1812) - 1823629..1825551 (-) 1923 WP_165773033.1 methyl-accepting chemotaxis protein -
  ACAN_RS09035 (ACAN_1813) radA 1825771..1827120 (+) 1350 WP_079577450.1 DNA repair protein RadA Machinery gene
  ACAN_RS09040 (ACAN_1814) - 1827150..1827599 (-) 450 WP_099333511.1 hypothetical protein -
  ACAN_RS09045 (ACAN_1815) - 1827596..1827901 (-) 306 WP_079577448.1 hypothetical protein -
  ACAN_RS09050 (ACAN_1816) ybeY 1828041..1828460 (+) 420 WP_099333512.1 rRNA maturation RNase YbeY -
  ACAN_RS09055 (ACAN_1817) - 1828463..1829383 (+) 921 WP_099333513.1 calcium/sodium antiporter -
  ACAN_RS09060 (ACAN_1818) - 1829390..1829794 (-) 405 WP_079577445.1 Fur family transcriptional regulator -
  ACAN_RS09065 (ACAN_1819) - 1829992..1830429 (+) 438 WP_099333514.1 Dps family protein -
  ACAN_RS09070 (ACAN_1820) - 1830519..1831172 (+) 654 WP_099333515.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49309.76 Da        Isoelectric Point: 6.7571

>NTDB_id=378714 ACAN_RS09035 WP_079577450.1 1825771..1827120(+) (radA) [Malaciobacter canalis strain LMG 29148]
MAKKKRSLFECQHCGEQATKWLGKCPNCGSWDSFIELNEEQQEVLKKTTKLVSTTSKAKSITQVKQDDITRFTSNNSEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGNIAQSNKKVLYVSGEESAGQIKLRANRLEANHDDLYLLSEIKLEEIMD
ELLRENYEVVIIDSIQTIYSAALTSAPGSVSQVREITFELMRKAKDTDIAMFIIGHITKDGAIAGPRVLEHMVDTVLYFE
GDASKEIRMLRGFKNRFGSTSEIGIFEMTNEGLVSAKDIASKFFDKSKPQSGSALTVAMEGSRALILEVQALVTESTHPN
PKRSATGFDANRLNMLLALLEKKIDLPLNHYDVFVNISGGIRIKESSADLAVIASIISSFRDRPLSKESAFIGEVSLTGE
IKDVYSIDMRLKEAQAQGIKKAICAQKPSTKLEIKVFAVDEVTKMLELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=378714 ACAN_RS09035 WP_079577450.1 1825771..1827120(+) (radA) [Malaciobacter canalis strain LMG 29148]
ATGGCAAAAAAGAAAAGATCTTTATTTGAATGTCAACACTGCGGAGAACAAGCAACAAAATGGCTAGGTAAATGTCCCAA
TTGTGGTTCTTGGGACAGTTTTATTGAGTTAAATGAAGAACAACAAGAAGTTTTAAAAAAAACAACAAAACTAGTATCAA
CAACATCAAAAGCAAAATCAATTACTCAAGTCAAGCAAGATGATATCACAAGGTTTACTTCAAACAATAGTGAATTTGAC
TTAGTTTTAGGAGGAGGCATAGTTCCTGGAAGCTTAACCTTAATTGGAGGAAGTCCAGGTGTTGGAAAATCAACTTTACT
TCTAAAAGTAGCTGGAAATATCGCACAAAGCAACAAAAAAGTTTTATATGTTTCAGGAGAAGAGAGTGCTGGACAAATAA
AACTAAGAGCAAATAGACTTGAAGCAAATCATGATGACTTATATTTATTAAGTGAAATTAAACTTGAAGAGATAATGGAT
GAGTTATTAAGAGAAAATTATGAAGTAGTAATTATTGACTCTATACAAACAATTTATTCAGCAGCTTTAACTTCAGCTCC
TGGTTCAGTTTCACAAGTACGAGAGATTACTTTTGAACTTATGAGAAAAGCAAAAGATACTGATATTGCTATGTTTATCA
TTGGACATATTACAAAAGATGGTGCAATCGCAGGTCCAAGAGTATTAGAGCATATGGTTGATACTGTCTTATATTTTGAA
GGTGATGCAAGTAAAGAGATACGAATGCTAAGAGGTTTTAAAAATAGATTTGGTTCAACATCAGAAATTGGTATTTTTGA
AATGACAAATGAGGGATTAGTTAGTGCAAAAGATATAGCCTCAAAATTTTTTGATAAATCAAAACCACAAAGTGGTTCTG
CTTTGACAGTTGCTATGGAAGGAAGTCGTGCACTTATTCTTGAAGTTCAAGCTTTAGTTACAGAAAGTACCCATCCAAAT
CCAAAAAGAAGTGCGACAGGCTTTGATGCAAATAGATTAAATATGCTCTTAGCACTACTTGAGAAAAAAATTGATTTACC
ATTAAACCATTATGATGTATTTGTAAATATAAGTGGAGGAATAAGAATAAAAGAGAGTTCTGCTGATTTAGCAGTAATCG
CAAGTATTATAAGCTCTTTTAGAGATAGACCATTATCAAAAGAATCTGCATTTATTGGTGAAGTTTCATTAACAGGTGAG
ATAAAAGATGTATATTCAATAGATATGAGATTAAAAGAGGCTCAAGCACAAGGAATAAAAAAAGCAATATGTGCACAAAA
GCCATCAACAAAACTTGAAATAAAAGTTTTTGCTGTTGATGAAGTTACAAAAATGTTAGAACTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

46.97

100

0.483
  radA Streptococcus mitis SK321

46.46

100

0.468
  radA Streptococcus mitis NCTC 12261

46.46

100

0.468
  radA Streptococcus pneumoniae Rx1

46.46

100

0.468
  radA Streptococcus pneumoniae D39

46.46

100

0.468
  radA Streptococcus pneumoniae R6

46.46

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.46

100

0.468

Multiple sequence alignment