Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CS053_RS06055 Genome accession   NZ_CP042807
Coordinates   1447340..1448722 (+) Length   460 a.a.
NCBI ID   WP_147626768.1    Uniprot ID   A0A5B9E0U6
Organism   Rhodanobacter glycinis strain T01E-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442340..1453722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS053_RS06025 (CS053_06025) - 1442367..1442693 (+) 327 WP_008213234.1 iron-sulfur cluster assembly accessory protein -
  CS053_RS06030 (CS053_06030) rpsF 1442908..1443351 (+) 444 WP_008213233.1 30S ribosomal protein S6 -
  CS053_RS06035 (CS053_06035) rpsR 1443366..1443596 (+) 231 WP_008213232.1 30S ribosomal protein S18 -
  CS053_RS06040 (CS053_06040) rplI 1443809..1444258 (+) 450 WP_147626766.1 50S ribosomal protein L9 -
  CS053_RS06045 (CS053_06045) - 1444459..1445856 (+) 1398 WP_008213229.1 replicative DNA helicase -
  CS053_RS06050 (CS053_06050) alr 1446167..1447255 (+) 1089 WP_147626767.1 alanine racemase -
  CS053_RS06055 (CS053_06055) radA 1447340..1448722 (+) 1383 WP_147626768.1 DNA repair protein RadA Machinery gene
  CS053_RS06060 (CS053_06060) ccsA 1448800..1449597 (-) 798 WP_092703310.1 cytochrome c biogenesis protein CcsA -
  CS053_RS06065 (CS053_06065) - 1449718..1450005 (+) 288 WP_008208895.1 autorepressor SdpR family transcription factor -
  CS053_RS06070 (CS053_06070) - 1450002..1450646 (+) 645 WP_147626769.1 SdpI family protein -
  CS053_RS06075 (CS053_06075) - 1450666..1452006 (+) 1341 WP_147626770.1 alpha/beta fold hydrolase -
  CS053_RS06080 (CS053_06080) ffh 1452075..1453454 (+) 1380 WP_147626771.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48305.54 Da        Isoelectric Point: 8.0672

>NTDB_id=378694 CS053_RS06055 WP_147626768.1 1447340..1448722(+) (radA) [Rhodanobacter glycinis strain T01E-68]
MAKAKTAYVCTDCGAEHPKWQGSCAECGAWNTLSEFVVQPAKAAAAGGARNSGYAGKAAGAAKVTALTEVATATESRTLT
GIGELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQMLGRIGAHLPGVYVTGEESLAQVASRAQRLDLPLEPLQALAETCI
ERILEQAMATRPRVLIIDSIQTIWTALLTAAPGSVSQVRESAAKLTRFAKESGTSVLLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLSAHSEPTAGSAVMVTREGTRPLLVEVQALVD
QSSLGNPRRVALGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAIRSSLRDRPLPDKTVAFGE
VGLSGEIRPVPNGEERLKEASTHGFKRAIVPKANAPKKGRVGEMEVIGVERLVQALDAAG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=378694 CS053_RS06055 WP_147626768.1 1447340..1448722(+) (radA) [Rhodanobacter glycinis strain T01E-68]
ATGGCCAAGGCCAAGACCGCCTACGTTTGCACCGATTGCGGTGCCGAGCATCCGAAGTGGCAGGGCTCGTGCGCCGAGTG
CGGCGCCTGGAACACGCTGAGCGAATTCGTGGTGCAACCGGCGAAGGCCGCCGCTGCAGGTGGGGCTCGCAACAGTGGCT
ACGCCGGCAAGGCGGCCGGTGCGGCGAAGGTGACCGCGTTGACCGAGGTGGCGACGGCCACCGAATCGCGCACGCTGACC
GGCATCGGCGAGCTCGATCGCGTGCTCGGCGGTGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAGTCCACGCTGCTGCTGCAGATGCTGGGGCGGATCGGCGCGCACCTGCCGGGCGTGTATGTCACCGGCGAGGAAT
CGCTGGCCCAGGTGGCTTCGCGCGCACAGCGCCTGGATCTGCCGCTGGAGCCGTTGCAGGCGCTGGCGGAAACCTGCATC
GAACGCATTCTCGAACAGGCCATGGCGACGCGGCCACGCGTACTCATCATCGATTCGATCCAGACCATCTGGACCGCGTT
GCTCACGGCTGCGCCGGGTTCGGTATCGCAGGTGCGCGAGTCGGCAGCCAAGCTGACGCGCTTCGCCAAGGAGAGCGGTA
CCAGCGTGCTGCTGGTCGGCCATGTCACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTTGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGCGAATCCGGTTCGCGTTTCCGCGTGCTGCGCGCCTTCAAGAATCGTTTTGGCGCGGTCAACGA
GCTGGGCGTGTTCGCGATGTCCGACAAGGGCTTGCGCGAAGTGCCCAATCCGTCGGCGATCTTCCTTTCCGCGCATAGCG
AGCCGACCGCCGGCAGCGCGGTGATGGTCACGCGCGAAGGCACGCGGCCGTTGCTGGTGGAGGTGCAGGCGCTGGTCGAC
CAGAGTTCGCTGGGCAATCCGCGCCGCGTGGCGCTGGGCCTGGAGCAGAATCGCCTGGCGATGCTGCTGGCGGTGCTGCA
TCGCCATGGTGGCGTGGCGGCCTACGACCAGGATGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAAACCGCGG
CGGACTTGCCGGTGCTGCTGGCGATCCGTTCATCGCTGCGCGATCGTCCGCTGCCGGACAAGACCGTGGCCTTCGGTGAA
GTCGGTTTGTCCGGTGAAATCCGCCCGGTACCCAACGGCGAGGAACGCCTGAAGGAGGCGTCCACGCATGGCTTCAAGCG
TGCCATCGTGCCCAAGGCGAATGCGCCGAAGAAAGGCCGCGTGGGCGAGATGGAAGTGATCGGCGTCGAGCGCCTGGTGC
AGGCCCTCGACGCGGCAGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(80-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B9E0U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.348

0.48
  radA Streptococcus mitis NCTC 12261

45.316

99.783

0.452
  radA Streptococcus pneumoniae Rx1

45.316

99.783

0.452
  radA Streptococcus pneumoniae D39

45.316

99.783

0.452
  radA Streptococcus pneumoniae R6

45.316

99.783

0.452
  radA Streptococcus pneumoniae TIGR4

45.316

99.783

0.452
  radA Streptococcus mitis SK321

45.316

99.783

0.452

Multiple sequence alignment