Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSYTB_RS02315 Genome accession   NZ_CP042804
Coordinates   459873..460283 (+) Length   136 a.a.
NCBI ID   WP_002551738.1    Uniprot ID   A0AAT9SFQ2
Organism   Pseudomonas amygdali pv. tabaci str. ATCC 11528     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 454873..465283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYTB_RS02285 (PSYTB_02285) - 454894..455898 (-) 1005 WP_004666454.1 aspartate carbamoyltransferase catalytic subunit -
  PSYTB_RS02290 (PSYTB_02290) pyrR 455911..456423 (-) 513 WP_002551733.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PSYTB_RS02295 (PSYTB_02295) ruvX 456522..456962 (-) 441 WP_002551734.1 Holliday junction resolvase RuvX -
  PSYTB_RS02300 (PSYTB_02300) - 456962..457534 (-) 573 WP_002551735.1 YqgE/AlgH family protein -
  PSYTB_RS02305 (PSYTB_02305) - 457610..458512 (-) 903 WP_016982509.1 energy transducer TonB -
  PSYTB_RS02310 (PSYTB_02310) gshB 458669..459628 (-) 960 WP_005743059.1 glutathione synthase -
  PSYTB_RS02315 (PSYTB_02315) pilG 459873..460283 (+) 411 WP_002551738.1 twitching motility response regulator PilG Regulator
  PSYTB_RS02320 (PSYTB_02320) pilH 460330..460695 (+) 366 WP_002551739.1 twitching motility response regulator PilH -
  PSYTB_RS02325 (PSYTB_02325) - 460710..461249 (+) 540 WP_002551740.1 chemotaxis protein CheW -
  PSYTB_RS02330 (PSYTB_02330) - 461298..463340 (+) 2043 WP_002551741.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14943.42 Da        Isoelectric Point: 8.5283

>NTDB_id=378648 PSYTB_RS02315 WP_002551738.1 459873..460283(+) (pilG) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAAEQHIS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=378648 PSYTB_RS02315 WP_002551738.1 459873..460283(+) (pilG) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
ATGGAACAACACGCCTCCGCCTTGAAAGTCATGGTCATCGATGACTCGAAGACCATTCGCCGCACCGCCGAAACACTGCT
TAAAAACGCAGGTTGTGAAGTCATCACTGCGATAGACGGTTTCGACGCGCTGGCCAAGATTGCCGATAACCACCCACGAA
TCATATTCGTAGATATCATGATGCCGCGTCTGGACGGTTATCAGACGTGTGCGCTGATCAAGAACAACCGCGCATTCAAG
TCCACGCCGGTCATCATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCCGATCAGTT
TTTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGGGCTTCGTCGCAGCAGAACAAC
ACATATCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691

Multiple sequence alignment