Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AACT_RS01360 Genome accession   NZ_CP042652
Coordinates   254926..255306 (+) Length   126 a.a.
NCBI ID   WP_172124275.1    Uniprot ID   A0A6M8EHX5
Organism   Arcobacter acticola strain KCTC 52212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 249926..260306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACT_RS01340 (AACT_0266) - 250716..251036 (-) 321 WP_172124267.1 cytochrome C -
  AACT_RS01345 (AACT_0267) - 251127..252455 (+) 1329 WP_172124269.1 NFACT RNA binding domain-containing protein -
  AACT_RS01350 (AACT_0268) - 252504..253868 (-) 1365 WP_172124271.1 transposase -
  AACT_RS01355 (AACT_0269) - 254018..254929 (+) 912 WP_172124273.1 methylenetetrahydrofolate reductase -
  AACT_RS01360 (AACT_0270) dprB 254926..255306 (+) 381 WP_172124275.1 Holliday junction resolvase RuvX Machinery gene
  AACT_RS01365 (AACT_0271) acpS 255323..255676 (-) 354 WP_172124277.1 holo-ACP synthase -
  AACT_RS01370 (AACT_0272) - 255841..257400 (-) 1560 WP_172124279.1 FAD-dependent oxidoreductase -
  AACT_RS01375 (AACT_0273) - 257903..258991 (+) 1089 WP_172124281.1 ABC transporter ATP-binding protein -
  AACT_RS01380 (AACT_0274) - 259006..260085 (+) 1080 WP_172124283.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14435.01 Da        Isoelectric Point: 8.7288

>NTDB_id=378623 AACT_RS01360 WP_172124275.1 254926..255306(+) (dprB) [Arcobacter acticola strain KCTC 52212]
MKLACIDVGLKRIGLAICLASNIVTPQSAILRKNRDQAARDINTFLKEWEIEKLIVGFPSASQEMQRRIMHFVSLLNLSI
PYEFCEENMSSIEAEEMMKGDIKYKRDGRVDSLAAKIILERFLTKK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=378623 AACT_RS01360 WP_172124275.1 254926..255306(+) (dprB) [Arcobacter acticola strain KCTC 52212]
TTGAAATTAGCTTGTATTGATGTTGGTCTTAAAAGAATAGGTTTAGCTATTTGTTTAGCTTCAAATATAGTAACTCCACA
AAGTGCAATTTTGAGAAAAAATAGAGACCAAGCAGCACGAGATATAAATACTTTTTTAAAAGAGTGGGAAATTGAAAAAC
TAATTGTAGGTTTTCCAAGTGCAAGCCAAGAGATGCAAAGAAGAATAATGCATTTTGTCTCTTTACTTAATCTTTCTATT
CCCTATGAATTTTGTGAAGAAAATATGAGCTCAATTGAAGCAGAAGAGATGATGAAAGGTGATATCAAATATAAAAGAGA
TGGAAGAGTTGATTCACTTGCAGCTAAAATAATACTAGAGCGATTTTTAACTAAGAAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8EHX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.565

100

0.484

Multiple sequence alignment