Detailed information NTG0378620

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB739_RS26550
• Genome accession: NZ_CP050326
• Coordinates: 5704095..5705099 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT423
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5699095..5710099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB739_RS26535 (HB739_26610)	-	5699579..5700586 (+)	1008	WP_012613731.1	TolB family protein	-
HB739_RS26540 (HB739_26615)	mutS	5700712..5703279 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
HB739_RS26545 (HB739_26620)	fdxA	5703346..5703669 (+)	324	WP_003092272.1	ferredoxin FdxA	-
HB739_RS26550 (HB739_26625)	rpoS	5704095..5705099 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB739_RS26555 (HB739_26630)	-	5705204..5706097 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB739_RS26560 (HB739_26635)	-	5706143..5706778 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB739_RS26565 (HB739_26640)	surE	5706811..5707560 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB739_RS26570 (HB739_26645)	truD	5707548..5708615 (-)	1068	WP_023087103.1	tRNA pseudouridine(13) synthase TruD	-
HB739_RS26575 (HB739_26650)	ispF	5708612..5709085 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB739_RS26580 (HB739_26655)	fghA	5709156..5710007 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378620 HB739_RS26550 WP_003113871.1 5704095..5705099(-) (rpoS) [Pseudomonas aeruginosa strain DVT423]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378620 HB739_RS26550 WP_003113871.1 5704095..5705099(-) (rpoS) [Pseudomonas aeruginosa strain DVT423]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653