Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FSZ17_RS15675 Genome accession   NZ_CP042593
Coordinates   3287099..3288790 (-) Length   563 a.a.
NCBI ID   WP_057771491.1    Uniprot ID   A0A5B8Z688
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3282099..3293790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS15650 (FSZ17_15645) - 3282889..3283125 (+) 237 WP_057771487.1 DUF2627 domain-containing protein -
  FSZ17_RS15655 (FSZ17_15650) - 3283216..3283944 (-) 729 WP_057771488.1 glycerophosphodiester phosphodiesterase -
  FSZ17_RS15660 (FSZ17_15655) - 3283983..3284126 (+) 144 WP_082625237.1 YycC family protein -
  FSZ17_RS15665 (FSZ17_15660) spo0A 3284342..3285133 (-) 792 WP_057771489.1 sporulation transcription factor Spo0A -
  FSZ17_RS15670 (FSZ17_15665) spoIVB 3285668..3286957 (-) 1290 WP_057771490.1 SpoIVB peptidase -
  FSZ17_RS15675 (FSZ17_15670) recN 3287099..3288790 (-) 1692 WP_057771491.1 DNA repair protein RecN Machinery gene
  FSZ17_RS15680 (FSZ17_15675) ahrC 3288807..3289256 (-) 450 WP_057771492.1 transcriptional regulator AhrC/ArgR -
  FSZ17_RS15685 (FSZ17_15680) - 3289390..3290232 (-) 843 WP_057771541.1 TlyA family RNA methyltransferase -
  FSZ17_RS15690 (FSZ17_15685) dxs 3290237..3292129 (-) 1893 WP_057771493.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FSZ17_RS15695 (FSZ17_15690) - 3292250..3293143 (-) 894 WP_057771494.1 polyprenyl synthetase family protein -
  FSZ17_RS15700 (FSZ17_15695) - 3293146..3293379 (-) 234 WP_146846495.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63647.70 Da        Isoelectric Point: 5.3559

>NTDB_id=378590 FSZ17_RS15675 WP_057771491.1 3287099..3288790(-) (recN) [Cytobacillus dafuensis strain FJAT-25496]
MLNELSIRNFAIIEALSISFDKGLTVLSGETGAGKSIIIDAIHLLVGGRGSVEFIRHGEEKAEIEGLFQVDDTNHPVYKK
ANEFGIELEDGMVVLRRDILKSGKSICRINGKLVTISILREVGSSLIDIHGQHEHQELMDDTMHISLLDQFGGAKISTAL
LGYQQVFQSYEQKLKNLKSLSENDQLMAHRLDLIQFQYDEIQKANLKLNEDEELFEEKRKLSNFERIFDSLQSGYSGLQG
EQRGLDWIGLVMGHLEEAAGLDQSYKDLAENVSNCFYQLEDAASILRNKLDFLEYDPERLANIDDRLNEIQQLKRKYGKS
IVEILEYASKIEEEIETLQNKETHIDKLEKEISSLKKDLRIEAEELSKSRKVSAQNLTNLIHKELKELYMEKTVFEVMFH
TDSDNFMRSGIDRVEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVAVDSQVLCISHLPQVAAMADTHLFIAKNIKDGRTKTSVKPLNEVEKIKEIGRMISGVEITDLTKEHAKELLQLANRLK
LQK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=378590 FSZ17_RS15675 WP_057771491.1 3287099..3288790(-) (recN) [Cytobacillus dafuensis strain FJAT-25496]
TTGCTAAATGAACTTTCAATTAGAAATTTTGCTATTATTGAAGCCCTTTCTATATCGTTCGATAAAGGTTTAACTGTATT
AAGTGGGGAAACAGGTGCAGGGAAATCAATTATCATTGATGCTATTCATTTACTGGTCGGTGGCAGAGGTTCAGTTGAAT
TTATTAGACATGGCGAGGAAAAGGCAGAAATTGAAGGGCTTTTTCAAGTAGACGACACAAACCATCCTGTTTACAAAAAA
GCAAATGAATTTGGTATAGAGCTTGAGGATGGAATGGTTGTACTAAGAAGAGATATTTTAAAGTCTGGAAAAAGCATTTG
CAGGATAAATGGAAAGCTTGTGACCATATCGATTTTGAGAGAGGTTGGCAGTTCGCTTATTGATATTCATGGACAGCACG
AGCATCAGGAACTAATGGATGATACGATGCATATTAGTTTACTTGATCAATTTGGTGGTGCAAAGATTTCAACTGCCCTT
TTAGGATACCAGCAAGTTTTTCAATCCTATGAACAAAAATTGAAAAACTTAAAAAGCTTAAGTGAAAATGATCAATTAAT
GGCGCATCGTCTGGATTTAATTCAATTTCAATACGATGAAATTCAAAAGGCAAATTTAAAACTAAATGAAGATGAAGAGC
TGTTTGAAGAGAAAAGAAAGCTGAGTAATTTTGAACGTATATTTGATTCTTTGCAGTCAGGCTATTCAGGCCTTCAAGGG
GAACAAAGAGGACTGGATTGGATTGGCTTAGTTATGGGTCATTTAGAGGAAGCGGCCGGACTTGATCAATCCTATAAAGA
CCTTGCAGAAAATGTATCAAATTGTTTTTATCAACTTGAGGATGCAGCTAGTATATTACGAAACAAACTTGATTTTCTTG
AATATGATCCAGAAAGGCTGGCCAACATTGATGACCGTTTAAATGAAATCCAACAGTTAAAACGAAAATACGGAAAATCA
ATTGTTGAAATCCTTGAATATGCATCAAAAATTGAGGAAGAAATCGAAACTTTGCAAAATAAAGAAACGCATATTGATAA
GCTTGAGAAAGAAATATCCTCACTTAAAAAGGACCTGCGAATTGAGGCTGAGGAATTAAGTAAATCAAGAAAAGTTTCAG
CCCAGAATTTAACAAATTTAATCCATAAAGAATTAAAAGAACTATATATGGAGAAGACAGTATTTGAAGTAATGTTTCAC
ACGGATTCTGATAACTTTATGAGAAGTGGAATCGACCGAGTTGAATTCTACCTTTCAACAAATCCAGGCGAACCATTAAA
GCCTCTATCTAAAATTGCTTCCGGAGGAGAGCTTTCGAGAATTATGCTTGCATTAAAGAGTATTTTTTCAAAGCATCAAG
GGGTTACTTCTATCATTTTTGATGAAGTAGATACCGGTGTTAGCGGAAGAGTTGCACAGGCGATTGCTGAAAAAATTCAT
CATGTAGCAGTTGATTCTCAAGTGTTATGTATTTCTCATTTACCGCAAGTTGCAGCAATGGCTGATACCCATTTGTTTAT
CGCAAAAAATATTAAAGATGGAAGGACTAAAACATCTGTCAAGCCTTTGAATGAAGTTGAAAAAATAAAAGAAATTGGCA
GGATGATATCTGGTGTTGAAATTACCGATTTAACAAAAGAGCATGCTAAAGAACTTCTTCAGCTTGCGAACAGGTTAAAG
CTTCAAAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.976

100

0.622

Multiple sequence alignment